Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 138257 | 0.67 | 0.885028 |
Target: 5'- aCGAUCUCuccAGCCuCGCC-CCCgUCGCUc -3' miRNA: 3'- -GCUAGAG---UUGG-GUGGcGGGgAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 45144 | 0.67 | 0.889582 |
Target: 5'- cCGAuccucUCUCGuucccggcguCCCGCCGCCCgCUCgacucgaucccucgGCCGa -3' miRNA: 3'- -GCU-----AGAGUu---------GGGUGGCGGG-GAG--------------UGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 65906 | 0.68 | 0.815735 |
Target: 5'- uCGAUCUCGGCaga-CGCCCCggucucgguuaccgUCGCCGu -3' miRNA: 3'- -GCUAGAGUUGggugGCGGGG--------------AGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 47505 | 0.68 | 0.809928 |
Target: 5'- -cAUCUUGAUugggaCCACCGCCCCUauugggacCACCGc -3' miRNA: 3'- gcUAGAGUUG-----GGUGGCGGGGA--------GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 154356 | 0.78 | 0.314434 |
Target: 5'- aGAa-UCAGCCCGCgGCCgCCUCGCCGa -3' miRNA: 3'- gCUagAGUUGGGUGgCGG-GGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 205961 | 0.78 | 0.321336 |
Target: 5'- uCGAgccgCUCAugCUGCCGCCgCUCACCa -3' miRNA: 3'- -GCUa---GAGUugGGUGGCGGgGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 131616 | 0.77 | 0.370472 |
Target: 5'- -cAUCUCAugCCGCCGCCacucucaucgcccuCCUCGCCa -3' miRNA: 3'- gcUAGAGUugGGUGGCGG--------------GGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 87230 | 0.74 | 0.518724 |
Target: 5'- uGAUCUCGAagaUgGCCGCCCCcggCGCCa -3' miRNA: 3'- gCUAGAGUUg--GgUGGCGGGGa--GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 90692 | 0.72 | 0.592975 |
Target: 5'- uGGUCUCccgcaugcguuUCCugCGCUCCUCGCCGu -3' miRNA: 3'- gCUAGAGuu---------GGGugGCGGGGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 177933 | 0.71 | 0.672607 |
Target: 5'- uCGGUCuUCGGCgCCGCCGCUUCUC-CUGg -3' miRNA: 3'- -GCUAG-AGUUG-GGUGGCGGGGAGuGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 102352 | 0.7 | 0.733545 |
Target: 5'- uGGUCgugCAAcaacgugaacaugguCCCGCCGCCCUcggCGCCGc -3' miRNA: 3'- gCUAGa--GUU---------------GGGUGGCGGGGa--GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 101635 | 0.7 | 0.748351 |
Target: 5'- ---gCUCGGCCCccacaGCCGgCUCUCGCCGc -3' miRNA: 3'- gcuaGAGUUGGG-----UGGCgGGGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 93022 | 0.7 | 0.748351 |
Target: 5'- gGAUCUCGucGCCCucGCUGUUCCUggCGCCGa -3' miRNA: 3'- gCUAGAGU--UGGG--UGGCGGGGA--GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 155424 | 0.69 | 0.775451 |
Target: 5'- gGAaCUCGGCcgCCACCGCCaCCgacggCACCa -3' miRNA: 3'- gCUaGAGUUG--GGUGGCGG-GGa----GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 194398 | 0.69 | 0.775451 |
Target: 5'- cCGAUgaCAucCCCGCCGCCgCCgcCGCCGu -3' miRNA: 3'- -GCUAgaGUu-GGGUGGCGG-GGa-GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 198566 | 0.69 | 0.775451 |
Target: 5'- gCGGUCUCccuGGCuaCCGCCGUCCUUCAgCCa -3' miRNA: 3'- -GCUAGAG---UUG--GGUGGCGGGGAGU-GGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 98722 | 0.69 | 0.783387 |
Target: 5'- --uUCUCGACCaccuugaCGCCGUCgCUCACCa -3' miRNA: 3'- gcuAGAGUUGG-------GUGGCGGgGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 171430 | 0.69 | 0.784263 |
Target: 5'- uCGAUCUCGACuCCGCCGUCgucggcgagCUCAuCCGc -3' miRNA: 3'- -GCUAGAGUUG-GGUGGCGGg--------GAGU-GGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 29462 | 0.69 | 0.792951 |
Target: 5'- --uUCUCcACCCguguucccgcuGCCGCCCgUCGCCc -3' miRNA: 3'- gcuAGAGuUGGG-----------UGGCGGGgAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 188895 | 0.69 | 0.792951 |
Target: 5'- aCGAgaagCUCAcggcccgacgACCCggacaccuGCCGCUCCUCACUa -3' miRNA: 3'- -GCUa---GAGU----------UGGG--------UGGCGGGGAGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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