miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 32616 0.68 0.842076
Target:  5'- aGAUCUaaUAACCC-UCGgCCgUCACCGg -3'
miRNA:   3'- gCUAGA--GUUGGGuGGCgGGgAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 154229 0.68 0.818201
Target:  5'- aGGUgcCUCG--CCGCCGCuccCCCUCGCCGa -3'
miRNA:   3'- gCUA--GAGUugGGUGGCG---GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 155424 0.69 0.775451
Target:  5'- gGAaCUCGGCcgCCACCGCCaCCgacggCACCa -3'
miRNA:   3'- gCUaGAGUUG--GGUGGCGG-GGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 131616 0.77 0.370472
Target:  5'- -cAUCUCAugCCGCCGCCacucucaucgcccuCCUCGCCa -3'
miRNA:   3'- gcUAGAGUugGGUGGCGG--------------GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 138257 0.67 0.885028
Target:  5'- aCGAUCUCuccAGCCuCGCC-CCCgUCGCUc -3'
miRNA:   3'- -GCUAGAG---UUGG-GUGGcGGGgAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 59104 0.67 0.864402
Target:  5'- ---aCUCGACCCgauacuauGCCGCCCUg-ACCGu -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGagUGGC- -5'
16220 5' -58.2 NC_004065.1 + 47505 0.68 0.809928
Target:  5'- -cAUCUUGAUugggaCCACCGCCCCUauugggacCACCGc -3'
miRNA:   3'- gcUAGAGUUG-----GGUGGCGGGGA--------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 205961 0.78 0.321336
Target:  5'- uCGAgccgCUCAugCUGCCGCCgCUCACCa -3'
miRNA:   3'- -GCUa---GAGUugGGUGGCGGgGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 187192 0.67 0.857142
Target:  5'- gGGUCUCGACCgACC-CUCCgCACgGg -3'
miRNA:   3'- gCUAGAGUUGGgUGGcGGGGaGUGgC- -5'
16220 5' -58.2 NC_004065.1 + 154356 0.78 0.314434
Target:  5'- aGAa-UCAGCCCGCgGCCgCCUCGCCGa -3'
miRNA:   3'- gCUagAGUUGGGUGgCGG-GGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 65906 0.68 0.815735
Target:  5'- uCGAUCUCGGCaga-CGCCCCggucucgguuaccgUCGCCGu -3'
miRNA:   3'- -GCUAGAGUUGggugGCGGGG--------------AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 163892 0.68 0.842076
Target:  5'- cCGGUCcgCGGCCCAgCGCgCCagCGCCu -3'
miRNA:   3'- -GCUAGa-GUUGGGUgGCGgGGa-GUGGc -5'
16220 5' -58.2 NC_004065.1 + 171430 0.69 0.784263
Target:  5'- uCGAUCUCGACuCCGCCGUCgucggcgagCUCAuCCGc -3'
miRNA:   3'- -GCUAGAGUUG-GGUGGCGGg--------GAGU-GGC- -5'
16220 5' -58.2 NC_004065.1 + 194398 0.69 0.775451
Target:  5'- cCGAUgaCAucCCCGCCGCCgCCgcCGCCGu -3'
miRNA:   3'- -GCUAgaGUu-GGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 102352 0.7 0.733545
Target:  5'- uGGUCgugCAAcaacgugaacaugguCCCGCCGCCCUcggCGCCGc -3'
miRNA:   3'- gCUAGa--GUU---------------GGGUGGCGGGGa--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 87230 0.74 0.518724
Target:  5'- uGAUCUCGAagaUgGCCGCCCCcggCGCCa -3'
miRNA:   3'- gCUAGAGUUg--GgUGGCGGGGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 28931 0.66 0.903836
Target:  5'- uCGGUUcaaggaAAgCCGCCGCCuCCgUCGCCGg -3'
miRNA:   3'- -GCUAGag----UUgGGUGGCGG-GG-AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 45144 0.67 0.889582
Target:  5'- cCGAuccucUCUCGuucccggcguCCCGCCGCCCgCUCgacucgaucccucgGCCGa -3'
miRNA:   3'- -GCU-----AGAGUu---------GGGUGGCGGG-GAG--------------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 168799 0.67 0.878349
Target:  5'- --cUCUCcGCCCuCUGCuCCUUCGCCa -3'
miRNA:   3'- gcuAGAGuUGGGuGGCG-GGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 120898 0.67 0.864402
Target:  5'- ----gUC-ACCCGCCGUCCC-CGCCa -3'
miRNA:   3'- gcuagAGuUGGGUGGCGGGGaGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.