miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 65906 0.68 0.815735
Target:  5'- uCGAUCUCGGCaga-CGCCCCggucucgguuaccgUCGCCGu -3'
miRNA:   3'- -GCUAGAGUUGggugGCGGGG--------------AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 182687 0.66 0.915323
Target:  5'- --cUCUCAuguuggccAUCCGuuGCCCCcCGCCGc -3'
miRNA:   3'- gcuAGAGU--------UGGGUggCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 47505 0.68 0.809928
Target:  5'- -cAUCUUGAUugggaCCACCGCCCCUauugggacCACCGc -3'
miRNA:   3'- gcUAGAGUUG-----GGUGGCGGGGA--------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 29342 0.68 0.834282
Target:  5'- --cUCUCAugUCAcCCGCCCCUCuCUc -3'
miRNA:   3'- gcuAGAGUugGGU-GGCGGGGAGuGGc -5'
16220 5' -58.2 NC_004065.1 + 163892 0.68 0.842076
Target:  5'- cCGGUCcgCGGCCCAgCGCgCCagCGCCu -3'
miRNA:   3'- -GCUAGa-GUUGGGUgGCGgGGa-GUGGc -5'
16220 5' -58.2 NC_004065.1 + 59104 0.67 0.864402
Target:  5'- ---aCUCGACCCgauacuauGCCGCCCUg-ACCGu -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGagUGGC- -5'
16220 5' -58.2 NC_004065.1 + 50338 0.66 0.920744
Target:  5'- aGAUCUgcaacagcggCAGCUucuucuggCACUGCUCCUCGCCc -3'
miRNA:   3'- gCUAGA----------GUUGG--------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 162346 0.66 0.915323
Target:  5'- aGAUggagGGCCCGCCGCCgCCgcCGCCGc -3'
miRNA:   3'- gCUAgag-UUGGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 105039 0.66 0.920744
Target:  5'- gCGcgCUgcaCGACCCG-CGCCUCUgGCCGc -3'
miRNA:   3'- -GCuaGA---GUUGGGUgGCGGGGAgUGGC- -5'
16220 5' -58.2 NC_004065.1 + 113204 0.66 0.909686
Target:  5'- -cAUCaCGGCCaCGCUGCCCCggucggUACCGg -3'
miRNA:   3'- gcUAGaGUUGG-GUGGCGGGGa-----GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 107846 0.66 0.909686
Target:  5'- cCGAggagCUCAacaaACUCACCGCCCUguucgUCAugauCCGg -3'
miRNA:   3'- -GCUa---GAGU----UGGGUGGCGGGG-----AGU----GGC- -5'
16220 5' -58.2 NC_004065.1 + 28931 0.66 0.903836
Target:  5'- uCGGUUcaaggaAAgCCGCCGCCuCCgUCGCCGg -3'
miRNA:   3'- -GCUAGag----UUgGGUGGCGG-GG-AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 45144 0.67 0.889582
Target:  5'- cCGAuccucUCUCGuucccggcguCCCGCCGCCCgCUCgacucgaucccucgGCCGa -3'
miRNA:   3'- -GCU-----AGAGUu---------GGGUGGCGGG-GAG--------------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 109567 0.67 0.871473
Target:  5'- uGGUCUgAGuuCCCGCCGCCCgaCAgCa -3'
miRNA:   3'- gCUAGAgUU--GGGUGGCGGGgaGUgGc -5'
16220 5' -58.2 NC_004065.1 + 94890 0.66 0.920744
Target:  5'- -cGUCgUCAucACCCGCCGCgCC-CGCCc -3'
miRNA:   3'- gcUAG-AGU--UGGGUGGCGgGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 166938 0.67 0.871473
Target:  5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3'
miRNA:   3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 15511 0.67 0.876307
Target:  5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3'
miRNA:   3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 117461 0.67 0.885028
Target:  5'- -cGUC-CGGCuCCGCgGCCgCUCGCCGc -3'
miRNA:   3'- gcUAGaGUUG-GGUGgCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 99844 0.69 0.766523
Target:  5'- -cGUUUCAGCgUCugCGCCCCgaUCGCCGc -3'
miRNA:   3'- gcUAGAGUUG-GGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 177510 0.69 0.766523
Target:  5'- gCGGcacUCUCuGCaCCACCGCCaCCgcgCGCCa -3'
miRNA:   3'- -GCU---AGAGuUG-GGUGGCGG-GGa--GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.