miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 48897 0.68 0.834282
Target:  5'- aCGuuUCUCucCCCGCCGCCgC-CACCc -3'
miRNA:   3'- -GCu-AGAGuuGGGUGGCGGgGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 177510 0.69 0.766523
Target:  5'- gCGGcacUCUCuGCaCCACCGCCaCCgcgCGCCa -3'
miRNA:   3'- -GCU---AGAGuUG-GGUGGCGG-GGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 99844 0.69 0.766523
Target:  5'- -cGUUUCAGCgUCugCGCCCCgaUCGCCGc -3'
miRNA:   3'- gcUAGAGUUG-GGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 81146 0.69 0.757487
Target:  5'- aGGUUUCGucCCCcUCGCCCCcCGCCGc -3'
miRNA:   3'- gCUAGAGUu-GGGuGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 159069 0.7 0.739123
Target:  5'- gCGAUCUgGACCgACCGCCgCgacCCGg -3'
miRNA:   3'- -GCUAGAgUUGGgUGGCGGgGaguGGC- -5'
16220 5' -58.2 NC_004065.1 + 87473 0.71 0.688995
Target:  5'- aGAUCUCcgGACCCGCCaccgggcagauaucGCacaaCCUCGCCa -3'
miRNA:   3'- gCUAGAG--UUGGGUGG--------------CGg---GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 202170 0.71 0.643498
Target:  5'- -cAUCUCGACCaguUCGCCCCgcggCACCa -3'
miRNA:   3'- gcUAGAGUUGGgu-GGCGGGGa---GUGGc -5'
16220 5' -58.2 NC_004065.1 + 1692 0.67 0.864402
Target:  5'- aGGUCguucCGuacguCCCACCGCCCaaagCACCc -3'
miRNA:   3'- gCUAGa---GUu----GGGUGGCGGGga--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 88364 0.67 0.869372
Target:  5'- cCGcUCUCGuccgcggccgcggcACcgCCACCGCCCUccgUCGCCGa -3'
miRNA:   3'- -GCuAGAGU--------------UG--GGUGGCGGGG---AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 85946 0.67 0.871473
Target:  5'- cCGAUCUCA--UCGCCGUCCUcgacgCGCCa -3'
miRNA:   3'- -GCUAGAGUugGGUGGCGGGGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 99291 0.66 0.920744
Target:  5'- -cGUC-CGAuCCCACCGCCCuCUCcuCCu -3'
miRNA:   3'- gcUAGaGUU-GGGUGGCGGG-GAGu-GGc -5'
16220 5' -58.2 NC_004065.1 + 90105 0.66 0.920744
Target:  5'- aCGAagUUCAACCCGCUGgCgC-CGCCGg -3'
miRNA:   3'- -GCUa-GAGUUGGGUGGCgGgGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 222583 0.66 0.920744
Target:  5'- aGGUCUCcucGCCCGCUGCCacgaUgGCCu -3'
miRNA:   3'- gCUAGAGu--UGGGUGGCGGgg--AgUGGc -5'
16220 5' -58.2 NC_004065.1 + 126311 0.66 0.915323
Target:  5'- aCGAUCac-GCCCGCCaggcGCUCCcCGCCGc -3'
miRNA:   3'- -GCUAGaguUGGGUGG----CGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 178231 0.66 0.915323
Target:  5'- gCGuGUCUCA-UCCACUGCCuuCCUCACa- -3'
miRNA:   3'- -GC-UAGAGUuGGGUGGCGG--GGAGUGgc -5'
16220 5' -58.2 NC_004065.1 + 96616 0.66 0.915323
Target:  5'- aGAUCUgAcCCCuuCGUCCUcgUCGCCGg -3'
miRNA:   3'- gCUAGAgUuGGGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 191384 0.67 0.878349
Target:  5'- aCGA-CgaaGACUCGgCGCaCCCUCGCCGu -3'
miRNA:   3'- -GCUaGag-UUGGGUgGCG-GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 15511 0.67 0.876307
Target:  5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3'
miRNA:   3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 166938 0.67 0.871473
Target:  5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3'
miRNA:   3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 163370 0.67 0.871473
Target:  5'- uCGAacaCUCGccgggcGCCCACCGCgCCgaaGCCGa -3'
miRNA:   3'- -GCUa--GAGU------UGGGUGGCGgGGag-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.