miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16221 3' -51.6 NC_004065.1 + 148834 0.66 0.998077
Target:  5'- cCCUcgcucgGCCACgAGGCGGccGCCGcgAUCg -3'
miRNA:   3'- -GGAca----UGGUG-UCUGCCa-CGGCaaUAG- -5'
16221 3' -51.6 NC_004065.1 + 114863 0.66 0.997718
Target:  5'- uCCUG-GCgAC-GACGGUGCCGc---- -3'
miRNA:   3'- -GGACaUGgUGuCUGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 99644 0.66 0.997718
Target:  5'- gCUGUGCCAgUAGAUGGagaaGCCGg---- -3'
miRNA:   3'- gGACAUGGU-GUCUGCCa---CGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 1865 0.66 0.997679
Target:  5'- cUCUGUucGCC-CAGcGCGGUuggagacGUCGUUAUCa -3'
miRNA:   3'- -GGACA--UGGuGUC-UGCCA-------CGGCAAUAG- -5'
16221 3' -51.6 NC_004065.1 + 29416 0.66 0.997304
Target:  5'- gCCgGUggGCCAgggcagggagaAGACGGUGCCGggGUa -3'
miRNA:   3'- -GGaCA--UGGUg----------UCUGCCACGGCaaUAg -5'
16221 3' -51.6 NC_004065.1 + 58661 0.66 0.99683
Target:  5'- gUUGUGCaCGCAGGCGGaGCUGa---- -3'
miRNA:   3'- gGACAUG-GUGUCUGCCaCGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 129451 0.66 0.99683
Target:  5'- --cGUGCCGCGGGCGGaaaaaaGCCGc---- -3'
miRNA:   3'- ggaCAUGGUGUCUGCCa-----CGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 127682 0.66 0.996289
Target:  5'- uCCUGccgACCucGCAGAgGGUGCUcugAUCg -3'
miRNA:   3'- -GGACa--UGG--UGUCUgCCACGGcaaUAG- -5'
16221 3' -51.6 NC_004065.1 + 219852 0.67 0.995675
Target:  5'- gCCUGU-CgGguGACGG-GCUGggAUCg -3'
miRNA:   3'- -GGACAuGgUguCUGCCaCGGCaaUAG- -5'
16221 3' -51.6 NC_004065.1 + 142592 0.67 0.995609
Target:  5'- aCCUGUuuucaguGCUACGaggagcugauGGCGGUGCCGa---- -3'
miRNA:   3'- -GGACA-------UGGUGU----------CUGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 218197 0.67 0.994197
Target:  5'- gCCUGUGCUA---GCGGUaaCGUUAUCg -3'
miRNA:   3'- -GGACAUGGUgucUGCCAcgGCAAUAG- -5'
16221 3' -51.6 NC_004065.1 + 195511 0.67 0.994197
Target:  5'- --cGUGCC-CGG-CGGUGCCGacuUCg -3'
miRNA:   3'- ggaCAUGGuGUCuGCCACGGCaauAG- -5'
16221 3' -51.6 NC_004065.1 + 103643 0.67 0.993319
Target:  5'- uUCUGcGCgaGCAGGCGGUcGCCGUg--- -3'
miRNA:   3'- -GGACaUGg-UGUCUGCCA-CGGCAauag -5'
16221 3' -51.6 NC_004065.1 + 164660 0.67 0.992337
Target:  5'- gCUGUAUCugGCAGACagagaaagugcaGGUGCgCGUUGUa -3'
miRNA:   3'- gGACAUGG--UGUCUG------------CCACG-GCAAUAg -5'
16221 3' -51.6 NC_004065.1 + 120010 0.68 0.991243
Target:  5'- ----cACgGCGGGCGGUGCCGg---- -3'
miRNA:   3'- ggacaUGgUGUCUGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 138566 0.68 0.990031
Target:  5'- aCUG-ACgGC-GACGGUGCCGUc--- -3'
miRNA:   3'- gGACaUGgUGuCUGCCACGGCAauag -5'
16221 3' -51.6 NC_004065.1 + 116837 0.68 0.990031
Target:  5'- gCCgugaugGUGgUGCAGugGGUGCCGa---- -3'
miRNA:   3'- -GGa-----CAUgGUGUCugCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 65920 0.68 0.98869
Target:  5'- aCUGUACCGCAaccUGGUGUCGcUGUa -3'
miRNA:   3'- gGACAUGGUGUcu-GCCACGGCaAUAg -5'
16221 3' -51.6 NC_004065.1 + 25503 0.68 0.98869
Target:  5'- gUCUGgcgACCAC-GACGGUcucGCCGUgcgCg -3'
miRNA:   3'- -GGACa--UGGUGuCUGCCA---CGGCAauaG- -5'
16221 3' -51.6 NC_004065.1 + 109287 0.68 0.98869
Target:  5'- --gGUGCUgaGCAuGACGGUGCgGUcGUCg -3'
miRNA:   3'- ggaCAUGG--UGU-CUGCCACGgCAaUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.