miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16221 3' -51.6 NC_004065.1 + 1865 0.66 0.997679
Target:  5'- cUCUGUucGCC-CAGcGCGGUuggagacGUCGUUAUCa -3'
miRNA:   3'- -GGACA--UGGuGUC-UGCCA-------CGGCAAUAG- -5'
16221 3' -51.6 NC_004065.1 + 7956 0.7 0.956038
Target:  5'- gCCUucGUACCcgACGGAgGGUGCCGg---- -3'
miRNA:   3'- -GGA--CAUGG--UGUCUgCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 25503 0.68 0.98869
Target:  5'- gUCUGgcgACCAC-GACGGUcucGCCGUgcgCg -3'
miRNA:   3'- -GGACa--UGGUGuCUGCCA---CGGCAauaG- -5'
16221 3' -51.6 NC_004065.1 + 29416 0.66 0.997304
Target:  5'- gCCgGUggGCCAgggcagggagaAGACGGUGCCGggGUa -3'
miRNA:   3'- -GGaCA--UGGUg----------UCUGCCACGGCaaUAg -5'
16221 3' -51.6 NC_004065.1 + 42307 0.68 0.987214
Target:  5'- aCCUcGUACCGCAGGCGcaGCCa----- -3'
miRNA:   3'- -GGA-CAUGGUGUCUGCcaCGGcaauag -5'
16221 3' -51.6 NC_004065.1 + 48450 0.73 0.872597
Target:  5'- aCC-GUACCcaggcugcaggaGguGACGGUGCCGUaGUCg -3'
miRNA:   3'- -GGaCAUGG------------UguCUGCCACGGCAaUAG- -5'
16221 3' -51.6 NC_004065.1 + 58661 0.66 0.99683
Target:  5'- gUUGUGCaCGCAGGCGGaGCUGa---- -3'
miRNA:   3'- gGACAUG-GUGUCUGCCaCGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 65920 0.68 0.98869
Target:  5'- aCUGUACCGCAaccUGGUGUCGcUGUa -3'
miRNA:   3'- gGACAUGGUGUcu-GCCACGGCaAUAg -5'
16221 3' -51.6 NC_004065.1 + 67863 0.72 0.918101
Target:  5'- aCCUGcGCCGCAGcCGGcgGCCG--AUCa -3'
miRNA:   3'- -GGACaUGGUGUCuGCCa-CGGCaaUAG- -5'
16221 3' -51.6 NC_004065.1 + 77187 0.68 0.985423
Target:  5'- uCCUGUGCCACAagugcgcGGCGGcGCCc----- -3'
miRNA:   3'- -GGACAUGGUGU-------CUGCCaCGGcaauag -5'
16221 3' -51.6 NC_004065.1 + 99644 0.66 0.997718
Target:  5'- gCUGUGCCAgUAGAUGGagaaGCCGg---- -3'
miRNA:   3'- gGACAUGGU-GUCUGCCa---CGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 103643 0.67 0.993319
Target:  5'- uUCUGcGCgaGCAGGCGGUcGCCGUg--- -3'
miRNA:   3'- -GGACaUGg-UGUCUGCCA-CGGCAauag -5'
16221 3' -51.6 NC_004065.1 + 109287 0.68 0.98869
Target:  5'- --gGUGCUgaGCAuGACGGUGCgGUcGUCg -3'
miRNA:   3'- ggaCAUGG--UGU-CUGCCACGgCAaUAG- -5'
16221 3' -51.6 NC_004065.1 + 114863 0.66 0.997718
Target:  5'- uCCUG-GCgAC-GACGGUGCCGc---- -3'
miRNA:   3'- -GGACaUGgUGuCUGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 116837 0.68 0.990031
Target:  5'- gCCgugaugGUGgUGCAGugGGUGCCGa---- -3'
miRNA:   3'- -GGa-----CAUgGUGUCugCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 120010 0.68 0.991243
Target:  5'- ----cACgGCGGGCGGUGCCGg---- -3'
miRNA:   3'- ggacaUGgUGUCUGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 121445 0.72 0.92367
Target:  5'- --cGUGCgguuggaGCGGAUGGUGCCGgUGUCg -3'
miRNA:   3'- ggaCAUGg------UGUCUGCCACGGCaAUAG- -5'
16221 3' -51.6 NC_004065.1 + 127682 0.66 0.996289
Target:  5'- uCCUGccgACCucGCAGAgGGUGCUcugAUCg -3'
miRNA:   3'- -GGACa--UGG--UGUCUgCCACGGcaaUAG- -5'
16221 3' -51.6 NC_004065.1 + 129451 0.66 0.99683
Target:  5'- --cGUGCCGCGGGCGGaaaaaaGCCGc---- -3'
miRNA:   3'- ggaCAUGGUGUCUGCCa-----CGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 138566 0.68 0.990031
Target:  5'- aCUG-ACgGC-GACGGUGCCGUc--- -3'
miRNA:   3'- gGACaUGgUGuCUGCCACGGCAauag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.