Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16221 | 3' | -51.6 | NC_004065.1 | + | 99644 | 0.66 | 0.997718 |
Target: 5'- gCUGUGCCAgUAGAUGGagaaGCCGg---- -3' miRNA: 3'- gGACAUGGU-GUCUGCCa---CGGCaauag -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 114863 | 0.66 | 0.997718 |
Target: 5'- uCCUG-GCgAC-GACGGUGCCGc---- -3' miRNA: 3'- -GGACaUGgUGuCUGCCACGGCaauag -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 142592 | 0.67 | 0.995609 |
Target: 5'- aCCUGUuuucaguGCUACGaggagcugauGGCGGUGCCGa---- -3' miRNA: 3'- -GGACA-------UGGUGU----------CUGCCACGGCaauag -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 195511 | 0.67 | 0.994197 |
Target: 5'- --cGUGCC-CGG-CGGUGCCGacuUCg -3' miRNA: 3'- ggaCAUGGuGUCuGCCACGGCaauAG- -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 218197 | 0.67 | 0.994197 |
Target: 5'- gCCUGUGCUA---GCGGUaaCGUUAUCg -3' miRNA: 3'- -GGACAUGGUgucUGCCAcgGCAAUAG- -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 164660 | 0.67 | 0.992337 |
Target: 5'- gCUGUAUCugGCAGACagagaaagugcaGGUGCgCGUUGUa -3' miRNA: 3'- gGACAUGG--UGUCUG------------CCACG-GCAAUAg -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 109287 | 0.68 | 0.98869 |
Target: 5'- --gGUGCUgaGCAuGACGGUGCgGUcGUCg -3' miRNA: 3'- ggaCAUGG--UGU-CUGCCACGgCAaUAG- -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 152300 | 0.69 | 0.977506 |
Target: 5'- --cGUugCGCAGGCGGaacGUCGggAUCg -3' miRNA: 3'- ggaCAugGUGUCUGCCa--CGGCaaUAG- -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 7956 | 0.7 | 0.956038 |
Target: 5'- gCCUucGUACCcgACGGAgGGUGCCGg---- -3' miRNA: 3'- -GGA--CAUGG--UGUCUgCCACGGCaauag -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 121445 | 0.72 | 0.92367 |
Target: 5'- --cGUGCgguuggaGCGGAUGGUGCCGgUGUCg -3' miRNA: 3'- ggaCAUGg------UGUCUGCCACGGCaAUAG- -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 177688 | 0.78 | 0.663165 |
Target: 5'- --aGUugCGCGGACGGUGCCGcggGUUg -3' miRNA: 3'- ggaCAugGUGUCUGCCACGGCaa-UAG- -5' |
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16221 | 3' | -51.6 | NC_004065.1 | + | 148834 | 0.66 | 0.998077 |
Target: 5'- cCCUcgcucgGCCACgAGGCGGccGCCGcgAUCg -3' miRNA: 3'- -GGAca----UGGUG-UCUGCCa-CGGCaaUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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