miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16221 3' -51.6 NC_004065.1 + 177191 0.72 0.92367
Target:  5'- gUUGaACCACucgagcgugcuGACGGUGCCGUucuUGUCa -3'
miRNA:   3'- gGACaUGGUGu----------CUGCCACGGCA---AUAG- -5'
16221 3' -51.6 NC_004065.1 + 152301 0.7 0.969539
Target:  5'- uCCUGcgGCgGCGG-CGGUGCCGg---- -3'
miRNA:   3'- -GGACa-UGgUGUCuGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 77187 0.68 0.985423
Target:  5'- uCCUGUGCCACAagugcgcGGCGGcGCCc----- -3'
miRNA:   3'- -GGACAUGGUGU-------CUGCCaCGGcaauag -5'
16221 3' -51.6 NC_004065.1 + 42307 0.68 0.987214
Target:  5'- aCCUcGUACCGCAGGCGcaGCCa----- -3'
miRNA:   3'- -GGA-CAUGGUGUCUGCcaCGGcaauag -5'
16221 3' -51.6 NC_004065.1 + 25503 0.68 0.98869
Target:  5'- gUCUGgcgACCAC-GACGGUcucGCCGUgcgCg -3'
miRNA:   3'- -GGACa--UGGUGuCUGCCA---CGGCAauaG- -5'
16221 3' -51.6 NC_004065.1 + 65920 0.68 0.98869
Target:  5'- aCUGUACCGCAaccUGGUGUCGcUGUa -3'
miRNA:   3'- gGACAUGGUGUcu-GCCACGGCaAUAg -5'
16221 3' -51.6 NC_004065.1 + 116837 0.68 0.990031
Target:  5'- gCCgugaugGUGgUGCAGugGGUGCCGa---- -3'
miRNA:   3'- -GGa-----CAUgGUGUCugCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 138566 0.68 0.990031
Target:  5'- aCUG-ACgGC-GACGGUGCCGUc--- -3'
miRNA:   3'- gGACaUGgUGuCUGCCACGGCAauag -5'
16221 3' -51.6 NC_004065.1 + 120010 0.68 0.991243
Target:  5'- ----cACgGCGGGCGGUGCCGg---- -3'
miRNA:   3'- ggacaUGgUGUCUGCCACGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 103643 0.67 0.993319
Target:  5'- uUCUGcGCgaGCAGGCGGUcGCCGUg--- -3'
miRNA:   3'- -GGACaUGg-UGUCUGCCA-CGGCAauag -5'
16221 3' -51.6 NC_004065.1 + 58661 0.66 0.99683
Target:  5'- gUUGUGCaCGCAGGCGGaGCUGa---- -3'
miRNA:   3'- gGACAUG-GUGUCUGCCaCGGCaauag -5'
16221 3' -51.6 NC_004065.1 + 209579 1.13 0.006565
Target:  5'- aCCUGUACCACAGACGGUGCCGUUAUCg -3'
miRNA:   3'- -GGACAUGGUGUCUGCCACGGCAAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.