miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16221 5' -50.1 NC_004065.1 + 145424 0.66 0.999158
Target:  5'- cUCGGCGGCGGCGCUuagggaaUC-GCgaUGGAg -3'
miRNA:   3'- -AGUUGUCGCCGUGAc------AGaCGaaAUCU- -5'
16221 5' -50.1 NC_004065.1 + 62093 0.66 0.999158
Target:  5'- aCGGCAGCGGCAgCggcgGUCguuacGCUcgcgGGAg -3'
miRNA:   3'- aGUUGUCGCCGU-Ga---CAGa----CGAaa--UCU- -5'
16221 5' -50.1 NC_004065.1 + 211321 0.66 0.998972
Target:  5'- aUCGACAGCGGCACcuUCgacgacucgGUggUGGGc -3'
miRNA:   3'- -AGUUGUCGCCGUGacAGa--------CGaaAUCU- -5'
16221 5' -50.1 NC_004065.1 + 79459 0.66 0.998753
Target:  5'- gCGGCGGacgacaGGUACUGUC-GCUacgUAGAc -3'
miRNA:   3'- aGUUGUCg-----CCGUGACAGaCGAa--AUCU- -5'
16221 5' -50.1 NC_004065.1 + 21112 0.66 0.998494
Target:  5'- -aGACGuGUGGCACUuUCUGCUgcgcccggAGAa -3'
miRNA:   3'- agUUGU-CGCCGUGAcAGACGAaa------UCU- -5'
16221 5' -50.1 NC_004065.1 + 187029 0.66 0.998192
Target:  5'- -uGGCGGCGGCGCggcGUCUGaggu-GAu -3'
miRNA:   3'- agUUGUCGCCGUGa--CAGACgaaauCU- -5'
16221 5' -50.1 NC_004065.1 + 36129 0.67 0.997432
Target:  5'- cCGGCGGCGGUugUGguggUUGUguuggUGGAu -3'
miRNA:   3'- aGUUGUCGCCGugACa---GACGaa---AUCU- -5'
16221 5' -50.1 NC_004065.1 + 66130 0.67 0.997432
Target:  5'- aUCGACAGUGGUACUGcUCcuagGCgguuccAGAu -3'
miRNA:   3'- -AGUUGUCGCCGUGAC-AGa---CGaaa---UCU- -5'
16221 5' -50.1 NC_004065.1 + 201532 0.67 0.997388
Target:  5'- gCGACGgagcuccGCGGCGCUGUCgGCc--AGAc -3'
miRNA:   3'- aGUUGU-------CGCCGUGACAGaCGaaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 50344 0.67 0.996912
Target:  5'- gCAACAGCGGCAgcuucuuCUGgcaCUGCUc---- -3'
miRNA:   3'- aGUUGUCGCCGU-------GACa--GACGAaaucu -5'
16221 5' -50.1 NC_004065.1 + 152305 0.67 0.996424
Target:  5'- gCGGCGGCGGCGgUGcCgGCgg-GGAc -3'
miRNA:   3'- aGUUGUCGCCGUgACaGaCGaaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 166157 0.67 0.996424
Target:  5'- gCGGCAGCGGCGCcgacGUCgUGCa----- -3'
miRNA:   3'- aGUUGUCGCCGUGa---CAG-ACGaaaucu -5'
16221 5' -50.1 NC_004065.1 + 94383 0.67 0.996424
Target:  5'- aCGGCcGCGGCgaGCUGUCgGCUgguggcgccgUAGAc -3'
miRNA:   3'- aGUUGuCGCCG--UGACAGaCGAa---------AUCU- -5'
16221 5' -50.1 NC_004065.1 + 65334 0.68 0.995111
Target:  5'- gCGGCGGCGGCAgcagCUGCgggUGGGu -3'
miRNA:   3'- aGUUGUCGCCGUgacaGACGaa-AUCU- -5'
16221 5' -50.1 NC_004065.1 + 154166 0.68 0.99432
Target:  5'- gCGGCGGCGGCGgCUGUUgcugGCUc---- -3'
miRNA:   3'- aGUUGUCGCCGU-GACAGa---CGAaaucu -5'
16221 5' -50.1 NC_004065.1 + 128538 0.68 0.992431
Target:  5'- gUCGACGgagagugguGUGGCugUGUCUGCg----- -3'
miRNA:   3'- -AGUUGU---------CGCCGugACAGACGaaaucu -5'
16221 5' -50.1 NC_004065.1 + 192810 0.69 0.990073
Target:  5'- -aGACGGCGGCGuCUGggcgCUGCgcuuGAg -3'
miRNA:   3'- agUUGUCGCCGU-GACa---GACGaaauCU- -5'
16221 5' -50.1 NC_004065.1 + 79242 0.69 0.990073
Target:  5'- cCAGCGGaucacgcugaCGGCGCgaUGUCUGCggcUAGAg -3'
miRNA:   3'- aGUUGUC----------GCCGUG--ACAGACGaa-AUCU- -5'
16221 5' -50.1 NC_004065.1 + 201934 0.69 0.985501
Target:  5'- aUCGACAGCGGCACc--CUGU---AGAu -3'
miRNA:   3'- -AGUUGUCGCCGUGacaGACGaaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 134872 0.69 0.985325
Target:  5'- aCGGCGGCGGCgacgagaACUGUC-GCUacGGAc -3'
miRNA:   3'- aGUUGUCGCCG-------UGACAGaCGAaaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.