miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16221 5' -50.1 NC_004065.1 + 209613 1.1 0.012045
Target:  5'- gUCAACAGCGGCACUGUCUGCUUUAGAc -3'
miRNA:   3'- -AGUUGUCGCCGUGACAGACGAAAUCU- -5'
16221 5' -50.1 NC_004065.1 + 62669 0.76 0.798686
Target:  5'- aCGGCAGCGGCGaccCUGUCUGCcgccgcgUUGGu -3'
miRNA:   3'- aGUUGUCGCCGU---GACAGACGa------AAUCu -5'
16221 5' -50.1 NC_004065.1 + 117070 0.76 0.816792
Target:  5'- uUCGGCcGCGGCGCUGUCgGUgg-AGAu -3'
miRNA:   3'- -AGUUGuCGCCGUGACAGaCGaaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 208542 0.75 0.858818
Target:  5'- gCAACAGCGGCAC---CUGCgugUGGAa -3'
miRNA:   3'- aGUUGUCGCCGUGacaGACGaa-AUCU- -5'
16221 5' -50.1 NC_004065.1 + 59900 0.73 0.914596
Target:  5'- aUCAugAGCGGC---GUCUGCUcgAGAa -3'
miRNA:   3'- -AGUugUCGCCGugaCAGACGAaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 224111 0.72 0.941464
Target:  5'- gCGACAcCGGaCGCUGUCUGCgaggcucgcgUUAGAu -3'
miRNA:   3'- aGUUGUcGCC-GUGACAGACGa---------AAUCU- -5'
16221 5' -50.1 NC_004065.1 + 62864 0.72 0.941464
Target:  5'- cCGGCAGCGGUgugGCgGUCUGCUg---- -3'
miRNA:   3'- aGUUGUCGCCG---UGaCAGACGAaaucu -5'
16221 5' -50.1 NC_004065.1 + 101546 0.72 0.946086
Target:  5'- gCAGCAGCGGCGCUGgCaGUggUAGc -3'
miRNA:   3'- aGUUGUCGCCGUGACaGaCGaaAUCu -5'
16221 5' -50.1 NC_004065.1 + 176185 0.71 0.954592
Target:  5'- gCGACGGCGGCGgaGgcagCUGUUUcAGAg -3'
miRNA:   3'- aGUUGUCGCCGUgaCa---GACGAAaUCU- -5'
16221 5' -50.1 NC_004065.1 + 160988 0.71 0.954592
Target:  5'- cCGGCGGCGGCggGCUG-CUGCUg---- -3'
miRNA:   3'- aGUUGUCGCCG--UGACaGACGAaaucu -5'
16221 5' -50.1 NC_004065.1 + 56124 0.71 0.96214
Target:  5'- aCGACGGCGGCGCUcgccuUCUGCa----- -3'
miRNA:   3'- aGUUGUCGCCGUGAc----AGACGaaaucu -5'
16221 5' -50.1 NC_004065.1 + 24876 0.71 0.96877
Target:  5'- cUCGACGGUGGCAaaGUC-GCUgaAGAu -3'
miRNA:   3'- -AGUUGUCGCCGUgaCAGaCGAaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 99951 0.7 0.981658
Target:  5'- gCGGCGGCGGCuGCUG-CUGCg----- -3'
miRNA:   3'- aGUUGUCGCCG-UGACaGACGaaaucu -5'
16221 5' -50.1 NC_004065.1 + 134872 0.69 0.985325
Target:  5'- aCGGCGGCGGCgacgagaACUGUC-GCUacGGAc -3'
miRNA:   3'- aGUUGUCGCCG-------UGACAGaCGAaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 201934 0.69 0.985501
Target:  5'- aUCGACAGCGGCACc--CUGU---AGAu -3'
miRNA:   3'- -AGUUGUCGCCGUGacaGACGaaaUCU- -5'
16221 5' -50.1 NC_004065.1 + 79242 0.69 0.990073
Target:  5'- cCAGCGGaucacgcugaCGGCGCgaUGUCUGCggcUAGAg -3'
miRNA:   3'- aGUUGUC----------GCCGUG--ACAGACGaa-AUCU- -5'
16221 5' -50.1 NC_004065.1 + 192810 0.69 0.990073
Target:  5'- -aGACGGCGGCGuCUGggcgCUGCgcuuGAg -3'
miRNA:   3'- agUUGUCGCCGU-GACa---GACGaaauCU- -5'
16221 5' -50.1 NC_004065.1 + 128538 0.68 0.992431
Target:  5'- gUCGACGgagagugguGUGGCugUGUCUGCg----- -3'
miRNA:   3'- -AGUUGU---------CGCCGugACAGACGaaaucu -5'
16221 5' -50.1 NC_004065.1 + 154166 0.68 0.99432
Target:  5'- gCGGCGGCGGCGgCUGUUgcugGCUc---- -3'
miRNA:   3'- aGUUGUCGCCGU-GACAGa---CGAaaucu -5'
16221 5' -50.1 NC_004065.1 + 65334 0.68 0.995111
Target:  5'- gCGGCGGCGGCAgcagCUGCgggUGGGu -3'
miRNA:   3'- aGUUGUCGCCGUgacaGACGaa-AUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.