Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16221 | 5' | -50.1 | NC_004065.1 | + | 21112 | 0.66 | 0.998494 |
Target: 5'- -aGACGuGUGGCACUuUCUGCUgcgcccggAGAa -3' miRNA: 3'- agUUGU-CGCCGUGAcAGACGAaa------UCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 24876 | 0.71 | 0.96877 |
Target: 5'- cUCGACGGUGGCAaaGUC-GCUgaAGAu -3' miRNA: 3'- -AGUUGUCGCCGUgaCAGaCGAaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 36129 | 0.67 | 0.997432 |
Target: 5'- cCGGCGGCGGUugUGguggUUGUguuggUGGAu -3' miRNA: 3'- aGUUGUCGCCGugACa---GACGaa---AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 50344 | 0.67 | 0.996912 |
Target: 5'- gCAACAGCGGCAgcuucuuCUGgcaCUGCUc---- -3' miRNA: 3'- aGUUGUCGCCGU-------GACa--GACGAaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 56124 | 0.71 | 0.96214 |
Target: 5'- aCGACGGCGGCGCUcgccuUCUGCa----- -3' miRNA: 3'- aGUUGUCGCCGUGAc----AGACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 59900 | 0.73 | 0.914596 |
Target: 5'- aUCAugAGCGGC---GUCUGCUcgAGAa -3' miRNA: 3'- -AGUugUCGCCGugaCAGACGAaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 62093 | 0.66 | 0.999158 |
Target: 5'- aCGGCAGCGGCAgCggcgGUCguuacGCUcgcgGGAg -3' miRNA: 3'- aGUUGUCGCCGU-Ga---CAGa----CGAaa--UCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 62669 | 0.76 | 0.798686 |
Target: 5'- aCGGCAGCGGCGaccCUGUCUGCcgccgcgUUGGu -3' miRNA: 3'- aGUUGUCGCCGU---GACAGACGa------AAUCu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 62864 | 0.72 | 0.941464 |
Target: 5'- cCGGCAGCGGUgugGCgGUCUGCUg---- -3' miRNA: 3'- aGUUGUCGCCG---UGaCAGACGAaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 65334 | 0.68 | 0.995111 |
Target: 5'- gCGGCGGCGGCAgcagCUGCgggUGGGu -3' miRNA: 3'- aGUUGUCGCCGUgacaGACGaa-AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 66130 | 0.67 | 0.997432 |
Target: 5'- aUCGACAGUGGUACUGcUCcuagGCgguuccAGAu -3' miRNA: 3'- -AGUUGUCGCCGUGAC-AGa---CGaaa---UCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 79242 | 0.69 | 0.990073 |
Target: 5'- cCAGCGGaucacgcugaCGGCGCgaUGUCUGCggcUAGAg -3' miRNA: 3'- aGUUGUC----------GCCGUG--ACAGACGaa-AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 79459 | 0.66 | 0.998753 |
Target: 5'- gCGGCGGacgacaGGUACUGUC-GCUacgUAGAc -3' miRNA: 3'- aGUUGUCg-----CCGUGACAGaCGAa--AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 94383 | 0.67 | 0.996424 |
Target: 5'- aCGGCcGCGGCgaGCUGUCgGCUgguggcgccgUAGAc -3' miRNA: 3'- aGUUGuCGCCG--UGACAGaCGAa---------AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 99951 | 0.7 | 0.981658 |
Target: 5'- gCGGCGGCGGCuGCUG-CUGCg----- -3' miRNA: 3'- aGUUGUCGCCG-UGACaGACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 101546 | 0.72 | 0.946086 |
Target: 5'- gCAGCAGCGGCGCUGgCaGUggUAGc -3' miRNA: 3'- aGUUGUCGCCGUGACaGaCGaaAUCu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 117070 | 0.76 | 0.816792 |
Target: 5'- uUCGGCcGCGGCGCUGUCgGUgg-AGAu -3' miRNA: 3'- -AGUUGuCGCCGUGACAGaCGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 128538 | 0.68 | 0.992431 |
Target: 5'- gUCGACGgagagugguGUGGCugUGUCUGCg----- -3' miRNA: 3'- -AGUUGU---------CGCCGugACAGACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 134872 | 0.69 | 0.985325 |
Target: 5'- aCGGCGGCGGCgacgagaACUGUC-GCUacGGAc -3' miRNA: 3'- aGUUGUCGCCG-------UGACAGaCGAaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 145424 | 0.66 | 0.999158 |
Target: 5'- cUCGGCGGCGGCGCUuagggaaUC-GCgaUGGAg -3' miRNA: 3'- -AGUUGUCGCCGUGAc------AGaCGaaAUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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