Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16221 | 5' | -50.1 | NC_004065.1 | + | 152305 | 0.67 | 0.996424 |
Target: 5'- gCGGCGGCGGCGgUGcCgGCgg-GGAc -3' miRNA: 3'- aGUUGUCGCCGUgACaGaCGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 154166 | 0.68 | 0.99432 |
Target: 5'- gCGGCGGCGGCGgCUGUUgcugGCUc---- -3' miRNA: 3'- aGUUGUCGCCGU-GACAGa---CGAaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 160988 | 0.71 | 0.954592 |
Target: 5'- cCGGCGGCGGCggGCUG-CUGCUg---- -3' miRNA: 3'- aGUUGUCGCCG--UGACaGACGAaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 166157 | 0.67 | 0.996424 |
Target: 5'- gCGGCAGCGGCGCcgacGUCgUGCa----- -3' miRNA: 3'- aGUUGUCGCCGUGa---CAG-ACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 176185 | 0.71 | 0.954592 |
Target: 5'- gCGACGGCGGCGgaGgcagCUGUUUcAGAg -3' miRNA: 3'- aGUUGUCGCCGUgaCa---GACGAAaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 187029 | 0.66 | 0.998192 |
Target: 5'- -uGGCGGCGGCGCggcGUCUGaggu-GAu -3' miRNA: 3'- agUUGUCGCCGUGa--CAGACgaaauCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 192810 | 0.69 | 0.990073 |
Target: 5'- -aGACGGCGGCGuCUGggcgCUGCgcuuGAg -3' miRNA: 3'- agUUGUCGCCGU-GACa---GACGaaauCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 201532 | 0.67 | 0.997388 |
Target: 5'- gCGACGgagcuccGCGGCGCUGUCgGCc--AGAc -3' miRNA: 3'- aGUUGU-------CGCCGUGACAGaCGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 201934 | 0.69 | 0.985501 |
Target: 5'- aUCGACAGCGGCACc--CUGU---AGAu -3' miRNA: 3'- -AGUUGUCGCCGUGacaGACGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 208542 | 0.75 | 0.858818 |
Target: 5'- gCAACAGCGGCAC---CUGCgugUGGAa -3' miRNA: 3'- aGUUGUCGCCGUGacaGACGaa-AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 209613 | 1.1 | 0.012045 |
Target: 5'- gUCAACAGCGGCACUGUCUGCUUUAGAc -3' miRNA: 3'- -AGUUGUCGCCGUGACAGACGAAAUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 211321 | 0.66 | 0.998972 |
Target: 5'- aUCGACAGCGGCACcuUCgacgacucgGUggUGGGc -3' miRNA: 3'- -AGUUGUCGCCGUGacAGa--------CGaaAUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 224111 | 0.72 | 0.941464 |
Target: 5'- gCGACAcCGGaCGCUGUCUGCgaggcucgcgUUAGAu -3' miRNA: 3'- aGUUGUcGCC-GUGACAGACGa---------AAUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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