Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16221 | 5' | -50.1 | NC_004065.1 | + | 209613 | 1.1 | 0.012045 |
Target: 5'- gUCAACAGCGGCACUGUCUGCUUUAGAc -3' miRNA: 3'- -AGUUGUCGCCGUGACAGACGAAAUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 145424 | 0.66 | 0.999158 |
Target: 5'- cUCGGCGGCGGCGCUuagggaaUC-GCgaUGGAg -3' miRNA: 3'- -AGUUGUCGCCGUGAc------AGaCGaaAUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 62093 | 0.66 | 0.999158 |
Target: 5'- aCGGCAGCGGCAgCggcgGUCguuacGCUcgcgGGAg -3' miRNA: 3'- aGUUGUCGCCGU-Ga---CAGa----CGAaa--UCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 36129 | 0.67 | 0.997432 |
Target: 5'- cCGGCGGCGGUugUGguggUUGUguuggUGGAu -3' miRNA: 3'- aGUUGUCGCCGugACa---GACGaa---AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 201532 | 0.67 | 0.997388 |
Target: 5'- gCGACGgagcuccGCGGCGCUGUCgGCc--AGAc -3' miRNA: 3'- aGUUGU-------CGCCGUGACAGaCGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 166157 | 0.67 | 0.996424 |
Target: 5'- gCGGCAGCGGCGCcgacGUCgUGCa----- -3' miRNA: 3'- aGUUGUCGCCGUGa---CAG-ACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 152305 | 0.67 | 0.996424 |
Target: 5'- gCGGCGGCGGCGgUGcCgGCgg-GGAc -3' miRNA: 3'- aGUUGUCGCCGUgACaGaCGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 154166 | 0.68 | 0.99432 |
Target: 5'- gCGGCGGCGGCGgCUGUUgcugGCUc---- -3' miRNA: 3'- aGUUGUCGCCGU-GACAGa---CGAaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 128538 | 0.68 | 0.992431 |
Target: 5'- gUCGACGgagagugguGUGGCugUGUCUGCg----- -3' miRNA: 3'- -AGUUGU---------CGCCGugACAGACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 79242 | 0.69 | 0.990073 |
Target: 5'- cCAGCGGaucacgcugaCGGCGCgaUGUCUGCggcUAGAg -3' miRNA: 3'- aGUUGUC----------GCCGUG--ACAGACGaa-AUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 201934 | 0.69 | 0.985501 |
Target: 5'- aUCGACAGCGGCACc--CUGU---AGAu -3' miRNA: 3'- -AGUUGUCGCCGUGacaGACGaaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 62669 | 0.76 | 0.798686 |
Target: 5'- aCGGCAGCGGCGaccCUGUCUGCcgccgcgUUGGu -3' miRNA: 3'- aGUUGUCGCCGU---GACAGACGa------AAUCu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 59900 | 0.73 | 0.914596 |
Target: 5'- aUCAugAGCGGC---GUCUGCUcgAGAa -3' miRNA: 3'- -AGUugUCGCCGugaCAGACGAaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 62864 | 0.72 | 0.941464 |
Target: 5'- cCGGCAGCGGUgugGCgGUCUGCUg---- -3' miRNA: 3'- aGUUGUCGCCG---UGaCAGACGAaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 176185 | 0.71 | 0.954592 |
Target: 5'- gCGACGGCGGCGgaGgcagCUGUUUcAGAg -3' miRNA: 3'- aGUUGUCGCCGUgaCa---GACGAAaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 56124 | 0.71 | 0.96214 |
Target: 5'- aCGACGGCGGCGCUcgccuUCUGCa----- -3' miRNA: 3'- aGUUGUCGCCGUGAc----AGACGaaaucu -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 24876 | 0.71 | 0.96877 |
Target: 5'- cUCGACGGUGGCAaaGUC-GCUgaAGAu -3' miRNA: 3'- -AGUUGUCGCCGUgaCAGaCGAaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 134872 | 0.69 | 0.985325 |
Target: 5'- aCGGCGGCGGCgacgagaACUGUC-GCUacGGAc -3' miRNA: 3'- aGUUGUCGCCG-------UGACAGaCGAaaUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 211321 | 0.66 | 0.998972 |
Target: 5'- aUCGACAGCGGCACcuUCgacgacucgGUggUGGGc -3' miRNA: 3'- -AGUUGUCGCCGUGacAGa--------CGaaAUCU- -5' |
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16221 | 5' | -50.1 | NC_004065.1 | + | 208542 | 0.75 | 0.858818 |
Target: 5'- gCAACAGCGGCAC---CUGCgugUGGAa -3' miRNA: 3'- aGUUGUCGCCGUGacaGACGaa-AUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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