miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 195195 0.66 0.669074
Target:  5'- uCGGUgAUGaagagaguuugagauUGGGCCAGGUgguGCCCGGa- -3'
miRNA:   3'- -GCCGgUAC---------------GCUCGGUCCG---CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 78656 0.66 0.665299
Target:  5'- uCGGCCGccaGCGcagcGGCC-GGCGCCgCGGc- -3'
miRNA:   3'- -GCCGGUa--CGC----UCGGuCCGCGG-GCCac -5'
16222 3' -64.1 NC_004065.1 + 61719 0.66 0.665299
Target:  5'- gCGGCgGaUGCGAGCCAuGCGCUccuuggCGGg- -3'
miRNA:   3'- -GCCGgU-ACGCUCGGUcCGCGG------GCCac -5'
16222 3' -64.1 NC_004065.1 + 94383 0.66 0.665299
Target:  5'- aCGGCCGcgGCGAGCUgu-CGgCUGGUGg -3'
miRNA:   3'- -GCCGGUa-CGCUCGGuccGCgGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 184179 0.66 0.665299
Target:  5'- gCGGCCAUcGCGucCCGuGCGgCCGGUc -3'
miRNA:   3'- -GCCGGUA-CGCucGGUcCGCgGGCCAc -5'
16222 3' -64.1 NC_004065.1 + 29683 0.66 0.655848
Target:  5'- cCGGCagguUGCuGAGCCucGGCGCCCcgacgggcuGGUa -3'
miRNA:   3'- -GCCGgu--ACG-CUCGGu-CCGCGGG---------CCAc -5'
16222 3' -64.1 NC_004065.1 + 170315 0.66 0.655848
Target:  5'- -cGCCGUGCGccgcGGCCGcucGGCGCCCu--- -3'
miRNA:   3'- gcCGGUACGC----UCGGU---CCGCGGGccac -5'
16222 3' -64.1 NC_004065.1 + 29493 0.66 0.64638
Target:  5'- uGGUCAgGCGuuCCAGGUaCUCGGUGa -3'
miRNA:   3'- gCCGGUaCGCucGGUCCGcGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 51520 0.66 0.64638
Target:  5'- aGGCCAUGaCGAcGCCGucGCGUCCGaUGa -3'
miRNA:   3'- gCCGGUAC-GCU-CGGUc-CGCGGGCcAC- -5'
16222 3' -64.1 NC_004065.1 + 169847 0.66 0.64638
Target:  5'- -cGCCGUGCGGGCCAGcGuCGaCCuGUGc -3'
miRNA:   3'- gcCGGUACGCUCGGUC-C-GCgGGcCAC- -5'
16222 3' -64.1 NC_004065.1 + 110834 0.66 0.636903
Target:  5'- aGGCaccaGUGCgGGGCgCGGGcCGCCCGcGUc -3'
miRNA:   3'- gCCGg---UACG-CUCG-GUCC-GCGGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 27462 0.66 0.636903
Target:  5'- -cGCgCAUcacgcGCGAGCuCGGGUuccuGCCCGGUGu -3'
miRNA:   3'- gcCG-GUA-----CGCUCG-GUCCG----CGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 151525 0.66 0.636903
Target:  5'- aGGCCGcUGCcGGCCGGGCGgugUCGGg- -3'
miRNA:   3'- gCCGGU-ACGcUCGGUCCGCg--GGCCac -5'
16222 3' -64.1 NC_004065.1 + 30474 0.66 0.635955
Target:  5'- gCGGCacgaugggGCGcGCCcggcuggAGGCGCCCGGcUGc -3'
miRNA:   3'- -GCCGgua-----CGCuCGG-------UCCGCGGGCC-AC- -5'
16222 3' -64.1 NC_004065.1 + 77984 0.66 0.617945
Target:  5'- uGGCCGcgGCGAGCC--GC-CCCGGg- -3'
miRNA:   3'- gCCGGUa-CGCUCGGucCGcGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 109908 0.66 0.617945
Target:  5'- aCGGCgCcgGCGAGUCAaGCGCCguaCGGa- -3'
miRNA:   3'- -GCCG-GuaCGCUCGGUcCGCGG---GCCac -5'
16222 3' -64.1 NC_004065.1 + 151160 0.67 0.608477
Target:  5'- uCGGCgAccGCGAGCU-GGCGCgCCGGc- -3'
miRNA:   3'- -GCCGgUa-CGCUCGGuCCGCG-GGCCac -5'
16222 3' -64.1 NC_004065.1 + 163332 0.67 0.602803
Target:  5'- cCGGUCGaGCuccugucucuuggggGGGCUgugGGGgGCCCGGUGg -3'
miRNA:   3'- -GCCGGUaCG---------------CUCGG---UCCgCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 109851 0.67 0.599024
Target:  5'- gGGCCAUcGCGcagguGCCGGGCGgugccaCCGGc- -3'
miRNA:   3'- gCCGGUA-CGCu----CGGUCCGCg-----GGCCac -5'
16222 3' -64.1 NC_004065.1 + 143291 0.67 0.580186
Target:  5'- gGGCCGagGCGGcGUCGGGgGCCgGGg- -3'
miRNA:   3'- gCCGGUa-CGCU-CGGUCCgCGGgCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.