miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 29801 0.68 0.533738
Target:  5'- gGGCCGuuacacgcUGCucGGCCAGGuCGUCCGGa- -3'
miRNA:   3'- gCCGGU--------ACGc-UCGGUCC-GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 35095 0.68 0.510102
Target:  5'- gGGCUgucucuGUGCGAGCCGguguaucgagacggcGGCGCCgUGGUc -3'
miRNA:   3'- gCCGG------UACGCUCGGU---------------CCGCGG-GCCAc -5'
16222 3' -64.1 NC_004065.1 + 163639 0.68 0.54017
Target:  5'- uCGGUCA-GCGAGCgCAGccgcucgacgaucaGCGgCCGGUGu -3'
miRNA:   3'- -GCCGGUaCGCUCG-GUC--------------CGCgGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 229469 0.68 0.552181
Target:  5'- aCGGCUcucCGGGCCGGGCGCCgcucgucgCGGa- -3'
miRNA:   3'- -GCCGGuacGCUCGGUCCGCGG--------GCCac -5'
16222 3' -64.1 NC_004065.1 + 109851 0.67 0.599024
Target:  5'- gGGCCAUcGCGcagguGCCGGGCGgugccaCCGGc- -3'
miRNA:   3'- gCCGGUA-CGCu----CGGUCCGCg-----GGCCac -5'
16222 3' -64.1 NC_004065.1 + 163332 0.67 0.602803
Target:  5'- cCGGUCGaGCuccugucucuuggggGGGCUgugGGGgGCCCGGUGg -3'
miRNA:   3'- -GCCGGUaCG---------------CUCGG---UCCgCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 143291 0.67 0.580186
Target:  5'- gGGCCGagGCGGcGUCGGGgGCCgGGg- -3'
miRNA:   3'- gCCGGUa-CGCU-CGGUCCgCGGgCCac -5'
16222 3' -64.1 NC_004065.1 + 65217 0.67 0.570812
Target:  5'- aCGGCCAgagUGCcGGCgGuGGCGCCCGu-- -3'
miRNA:   3'- -GCCGGU---ACGcUCGgU-CCGCGGGCcac -5'
16222 3' -64.1 NC_004065.1 + 124651 0.67 0.560545
Target:  5'- cCGGCCGUcaGCGAGuCCGGGUccGCCgucaggaagaacuUGGUGu -3'
miRNA:   3'- -GCCGGUA--CGCUC-GGUCCG--CGG-------------GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 74134 0.67 0.561476
Target:  5'- aGGaCGU-CGAGgCGGGUGCCCGGg- -3'
miRNA:   3'- gCCgGUAcGCUCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 151160 0.67 0.608477
Target:  5'- uCGGCgAccGCGAGCU-GGCGCgCCGGc- -3'
miRNA:   3'- -GCCGgUa-CGCUCGGuCCGCG-GGCCac -5'
16222 3' -64.1 NC_004065.1 + 165699 0.67 0.561476
Target:  5'- gGGCCucGUGUGAGCCcGGCuGUCCcuugaccacGGUGa -3'
miRNA:   3'- gCCGG--UACGCUCGGuCCG-CGGG---------CCAC- -5'
16222 3' -64.1 NC_004065.1 + 107769 0.67 0.561476
Target:  5'- uGGCCGgcgGgGGGUUAGGacgcCGCCCGGa- -3'
miRNA:   3'- gCCGGUa--CgCUCGGUCC----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 27462 0.66 0.636903
Target:  5'- -cGCgCAUcacgcGCGAGCuCGGGUuccuGCCCGGUGu -3'
miRNA:   3'- gcCG-GUA-----CGCUCG-GUCCG----CGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 110834 0.66 0.636903
Target:  5'- aGGCaccaGUGCgGGGCgCGGGcCGCCCGcGUc -3'
miRNA:   3'- gCCGg---UACG-CUCG-GUCC-GCGGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 195195 0.66 0.669074
Target:  5'- uCGGUgAUGaagagaguuugagauUGGGCCAGGUgguGCCCGGa- -3'
miRNA:   3'- -GCCGgUAC---------------GCUCGGUCCG---CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 78656 0.66 0.665299
Target:  5'- uCGGCCGccaGCGcagcGGCC-GGCGCCgCGGc- -3'
miRNA:   3'- -GCCGGUa--CGC----UCGGuCCGCGG-GCCac -5'
16222 3' -64.1 NC_004065.1 + 61719 0.66 0.665299
Target:  5'- gCGGCgGaUGCGAGCCAuGCGCUccuuggCGGg- -3'
miRNA:   3'- -GCCGgU-ACGCUCGGUcCGCGG------GCCac -5'
16222 3' -64.1 NC_004065.1 + 51520 0.66 0.64638
Target:  5'- aGGCCAUGaCGAcGCCGucGCGUCCGaUGa -3'
miRNA:   3'- gCCGGUAC-GCU-CGGUc-CGCGGGCcAC- -5'
16222 3' -64.1 NC_004065.1 + 29493 0.66 0.64638
Target:  5'- uGGUCAgGCGuuCCAGGUaCUCGGUGa -3'
miRNA:   3'- gCCGGUaCGCucGGUCCGcGGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.