miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 211479 1.07 0.001095
Target:  5'- uCGGCCAUGCGAGCCAGGCGCCCGGUGa -3'
miRNA:   3'- -GCCGGUACGCUCGGUCCGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 82767 0.75 0.217692
Target:  5'- aCGGCCucgGaGAG-CAGGCGUCCGGUGg -3'
miRNA:   3'- -GCCGGua-CgCUCgGUCCGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 122740 0.73 0.266256
Target:  5'- uGGCCGUGC--GUCGGGCGCCCaGGa- -3'
miRNA:   3'- gCCGGUACGcuCGGUCCGCGGG-CCac -5'
16222 3' -64.1 NC_004065.1 + 125602 0.72 0.30916
Target:  5'- uGGCCGUGCGcGGCgGGucgaugcGCGCCUGGUa -3'
miRNA:   3'- gCCGGUACGC-UCGgUC-------CGCGGGCCAc -5'
16222 3' -64.1 NC_004065.1 + 6159 0.72 0.330087
Target:  5'- cCGGCCGagaugGcCGGGCCGGGCGgCCGaGUa -3'
miRNA:   3'- -GCCGGUa----C-GCUCGGUCCGCgGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 163899 0.72 0.337057
Target:  5'- gCGGCCcaGCGcGCCA-GCGCCuCGGUGa -3'
miRNA:   3'- -GCCGGuaCGCuCGGUcCGCGG-GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 199519 0.71 0.358604
Target:  5'- gCGGCCgccacGUGCGcgcAGCCGGGCGCcuccagCCGGg- -3'
miRNA:   3'- -GCCGG-----UACGC---UCGGUCCGCG------GGCCac -5'
16222 3' -64.1 NC_004065.1 + 71963 0.71 0.373495
Target:  5'- -cGCCgGUG-GAGCCGGGCaGCCCGGa- -3'
miRNA:   3'- gcCGG-UACgCUCGGUCCG-CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 80381 0.71 0.373495
Target:  5'- gCGGCgCGUGCaGGGCCugccgacGGCGCCggugaCGGUGg -3'
miRNA:   3'- -GCCG-GUACG-CUCGGu------CCGCGG-----GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 197380 0.7 0.396606
Target:  5'- gGGCCGUgGCGAuGUugaCAGGCaGuCCCGGUGa -3'
miRNA:   3'- gCCGGUA-CGCU-CG---GUCCG-C-GGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 45111 0.7 0.420618
Target:  5'- cCGGCCGcuccCGAGCCacccGGGCGCCCGc-- -3'
miRNA:   3'- -GCCGGUac--GCUCGG----UCCGCGGGCcac -5'
16222 3' -64.1 NC_004065.1 + 25901 0.7 0.428815
Target:  5'- aCGGCCccgGCGGGCCAGGCcauGCgCaGGUu -3'
miRNA:   3'- -GCCGGua-CGCUCGGUCCG---CGgG-CCAc -5'
16222 3' -64.1 NC_004065.1 + 120150 0.69 0.462515
Target:  5'- gCGGCCGcgGCGAcGCCGGuggcacCGCCCGGc- -3'
miRNA:   3'- -GCCGGUa-CGCU-CGGUCc-----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 136400 0.69 0.48868
Target:  5'- aGGUCGguagccgGgGAGCUgguccuGGGgGCCCGGUGa -3'
miRNA:   3'- gCCGGUa------CgCUCGG------UCCgCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 189124 0.69 0.48868
Target:  5'- gGGCCcgGaCaAGCCGGcGCGUgCGGUGa -3'
miRNA:   3'- gCCGGuaC-GcUCGGUC-CGCGgGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 66644 0.68 0.497556
Target:  5'- uCGGCUucgGCGcGgUGGGCGCCCGGc- -3'
miRNA:   3'- -GCCGGua-CGCuCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 158047 0.68 0.497556
Target:  5'- aGGgCAUGCGucGCCuccGGGCuGCCCGGc- -3'
miRNA:   3'- gCCgGUACGCu-CGG---UCCG-CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 99666 0.68 0.497556
Target:  5'- cCGGCgGcGCGGcGCCGacaGCGUCCGGUGa -3'
miRNA:   3'- -GCCGgUaCGCU-CGGUc--CGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 191237 0.68 0.506504
Target:  5'- gGGCUcUGCGGgcGCCAGaccgucaGCCCGGUGu -3'
miRNA:   3'- gCCGGuACGCU--CGGUCcg-----CGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 35095 0.68 0.510102
Target:  5'- gGGCUgucucuGUGCGAGCCGguguaucgagacggcGGCGCCgUGGUc -3'
miRNA:   3'- gCCGG------UACGCUCGGU---------------CCGCGG-GCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.