miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 186900 0.68 0.524599
Target:  5'- gCGGCCGgcggucuucGCGAGCgCGgaucGGCGCCgGGUc -3'
miRNA:   3'- -GCCGGUa--------CGCUCG-GU----CCGCGGgCCAc -5'
16222 3' -64.1 NC_004065.1 + 29801 0.68 0.533738
Target:  5'- gGGCCGuuacacgcUGCucGGCCAGGuCGUCCGGa- -3'
miRNA:   3'- gCCGGU--------ACGc-UCGGUCC-GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 163639 0.68 0.54017
Target:  5'- uCGGUCA-GCGAGCgCAGccgcucgacgaucaGCGgCCGGUGu -3'
miRNA:   3'- -GCCGGUaCGCUCG-GUC--------------CGCgGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 229469 0.68 0.552181
Target:  5'- aCGGCUcucCGGGCCGGGCGCCgcucgucgCGGa- -3'
miRNA:   3'- -GCCGGuacGCUCGGUCCGCGG--------GCCac -5'
16222 3' -64.1 NC_004065.1 + 124651 0.67 0.560545
Target:  5'- cCGGCCGUcaGCGAGuCCGGGUccGCCgucaggaagaacuUGGUGu -3'
miRNA:   3'- -GCCGGUA--CGCUC-GGUCCG--CGG-------------GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 74134 0.67 0.561476
Target:  5'- aGGaCGU-CGAGgCGGGUGCCCGGg- -3'
miRNA:   3'- gCCgGUAcGCUCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 107769 0.67 0.561476
Target:  5'- uGGCCGgcgGgGGGUUAGGacgcCGCCCGGa- -3'
miRNA:   3'- gCCGGUa--CgCUCGGUCC----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 165699 0.67 0.561476
Target:  5'- gGGCCucGUGUGAGCCcGGCuGUCCcuugaccacGGUGa -3'
miRNA:   3'- gCCGG--UACGCUCGGuCCG-CGGG---------CCAC- -5'
16222 3' -64.1 NC_004065.1 + 65217 0.67 0.570812
Target:  5'- aCGGCCAgagUGCcGGCgGuGGCGCCCGu-- -3'
miRNA:   3'- -GCCGGU---ACGcUCGgU-CCGCGGGCcac -5'
16222 3' -64.1 NC_004065.1 + 143291 0.67 0.580186
Target:  5'- gGGCCGagGCGGcGUCGGGgGCCgGGg- -3'
miRNA:   3'- gCCGGUa-CGCU-CGGUCCgCGGgCCac -5'
16222 3' -64.1 NC_004065.1 + 109851 0.67 0.599024
Target:  5'- gGGCCAUcGCGcagguGCCGGGCGgugccaCCGGc- -3'
miRNA:   3'- gCCGGUA-CGCu----CGGUCCGCg-----GGCCac -5'
16222 3' -64.1 NC_004065.1 + 163332 0.67 0.602803
Target:  5'- cCGGUCGaGCuccugucucuuggggGGGCUgugGGGgGCCCGGUGg -3'
miRNA:   3'- -GCCGGUaCG---------------CUCGG---UCCgCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 151160 0.67 0.608477
Target:  5'- uCGGCgAccGCGAGCU-GGCGCgCCGGc- -3'
miRNA:   3'- -GCCGgUa-CGCUCGGuCCGCG-GGCCac -5'
16222 3' -64.1 NC_004065.1 + 77984 0.66 0.617945
Target:  5'- uGGCCGcgGCGAGCC--GC-CCCGGg- -3'
miRNA:   3'- gCCGGUa-CGCUCGGucCGcGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 109908 0.66 0.617945
Target:  5'- aCGGCgCcgGCGAGUCAaGCGCCguaCGGa- -3'
miRNA:   3'- -GCCG-GuaCGCUCGGUcCGCGG---GCCac -5'
16222 3' -64.1 NC_004065.1 + 30474 0.66 0.635955
Target:  5'- gCGGCacgaugggGCGcGCCcggcuggAGGCGCCCGGcUGc -3'
miRNA:   3'- -GCCGgua-----CGCuCGG-------UCCGCGGGCC-AC- -5'
16222 3' -64.1 NC_004065.1 + 110834 0.66 0.636903
Target:  5'- aGGCaccaGUGCgGGGCgCGGGcCGCCCGcGUc -3'
miRNA:   3'- gCCGg---UACG-CUCG-GUCC-GCGGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 151525 0.66 0.636903
Target:  5'- aGGCCGcUGCcGGCCGGGCGgugUCGGg- -3'
miRNA:   3'- gCCGGU-ACGcUCGGUCCGCg--GGCCac -5'
16222 3' -64.1 NC_004065.1 + 27462 0.66 0.636903
Target:  5'- -cGCgCAUcacgcGCGAGCuCGGGUuccuGCCCGGUGu -3'
miRNA:   3'- gcCG-GUA-----CGCUCG-GUCCG----CGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 29493 0.66 0.64638
Target:  5'- uGGUCAgGCGuuCCAGGUaCUCGGUGa -3'
miRNA:   3'- gCCGGUaCGCucGGUCCGcGGGCCAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.