Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 51520 | 0.66 | 0.64638 |
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Target: 5'- aGGCCAUGaCGAcGCCGucGCGUCCGaUGa -3' miRNA: 3'- gCCGGUAC-GCU-CGGUc-CGCGGGCcAC- -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 29493 | 0.66 | 0.64638 |
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Target: 5'- uGGUCAgGCGuuCCAGGUaCUCGGUGa -3' miRNA: 3'- gCCGGUaCGCucGGUCCGcGGGCCAC- -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 29683 | 0.66 | 0.655848 |
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Target: 5'- cCGGCagguUGCuGAGCCucGGCGCCCcgacgggcuGGUa -3' miRNA: 3'- -GCCGgu--ACG-CUCGGu-CCGCGGG---------CCAc -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 170315 | 0.66 | 0.655848 |
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Target: 5'- -cGCCGUGCGccgcGGCCGcucGGCGCCCu--- -3' miRNA: 3'- gcCGGUACGC----UCGGU---CCGCGGGccac -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 61719 | 0.66 | 0.665299 |
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Target: 5'- gCGGCgGaUGCGAGCCAuGCGCUccuuggCGGg- -3' miRNA: 3'- -GCCGgU-ACGCUCGGUcCGCGG------GCCac -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 78656 | 0.66 | 0.665299 |
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Target: 5'- uCGGCCGccaGCGcagcGGCC-GGCGCCgCGGc- -3' miRNA: 3'- -GCCGGUa--CGC----UCGGuCCGCGG-GCCac -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 184179 | 0.66 | 0.665299 |
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Target: 5'- gCGGCCAUcGCGucCCGuGCGgCCGGUc -3' miRNA: 3'- -GCCGGUA-CGCucGGUcCGCgGGCCAc -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 94383 | 0.66 | 0.665299 |
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Target: 5'- aCGGCCGcgGCGAGCUgu-CGgCUGGUGg -3' miRNA: 3'- -GCCGGUa-CGCUCGGuccGCgGGCCAC- -5' |
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| 16222 | 3' | -64.1 | NC_004065.1 | + | 195195 | 0.66 | 0.669074 |
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Target: 5'- uCGGUgAUGaagagaguuugagauUGGGCCAGGUgguGCCCGGa- -3' miRNA: 3'- -GCCGgUAC---------------GCUCGGUCCG---CGGGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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