Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16222 | 3' | -64.1 | NC_004065.1 | + | 65217 | 0.67 | 0.570812 |
Target: 5'- aCGGCCAgagUGCcGGCgGuGGCGCCCGu-- -3' miRNA: 3'- -GCCGGU---ACGcUCGgU-CCGCGGGCcac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 165699 | 0.67 | 0.561476 |
Target: 5'- gGGCCucGUGUGAGCCcGGCuGUCCcuugaccacGGUGa -3' miRNA: 3'- gCCGG--UACGCUCGGuCCG-CGGG---------CCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 107769 | 0.67 | 0.561476 |
Target: 5'- uGGCCGgcgGgGGGUUAGGacgcCGCCCGGa- -3' miRNA: 3'- gCCGGUa--CgCUCGGUCC----GCGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 74134 | 0.67 | 0.561476 |
Target: 5'- aGGaCGU-CGAGgCGGGUGCCCGGg- -3' miRNA: 3'- gCCgGUAcGCUCgGUCCGCGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 124651 | 0.67 | 0.560545 |
Target: 5'- cCGGCCGUcaGCGAGuCCGGGUccGCCgucaggaagaacuUGGUGu -3' miRNA: 3'- -GCCGGUA--CGCUC-GGUCCG--CGG-------------GCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 229469 | 0.68 | 0.552181 |
Target: 5'- aCGGCUcucCGGGCCGGGCGCCgcucgucgCGGa- -3' miRNA: 3'- -GCCGGuacGCUCGGUCCGCGG--------GCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 163639 | 0.68 | 0.54017 |
Target: 5'- uCGGUCA-GCGAGCgCAGccgcucgacgaucaGCGgCCGGUGu -3' miRNA: 3'- -GCCGGUaCGCUCG-GUC--------------CGCgGGCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 29801 | 0.68 | 0.533738 |
Target: 5'- gGGCCGuuacacgcUGCucGGCCAGGuCGUCCGGa- -3' miRNA: 3'- gCCGGU--------ACGc-UCGGUCC-GCGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 186900 | 0.68 | 0.524599 |
Target: 5'- gCGGCCGgcggucuucGCGAGCgCGgaucGGCGCCgGGUc -3' miRNA: 3'- -GCCGGUa--------CGCUCG-GU----CCGCGGgCCAc -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 35095 | 0.68 | 0.510102 |
Target: 5'- gGGCUgucucuGUGCGAGCCGguguaucgagacggcGGCGCCgUGGUc -3' miRNA: 3'- gCCGG------UACGCUCGGU---------------CCGCGG-GCCAc -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 191237 | 0.68 | 0.506504 |
Target: 5'- gGGCUcUGCGGgcGCCAGaccgucaGCCCGGUGu -3' miRNA: 3'- gCCGGuACGCU--CGGUCcg-----CGGGCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 158047 | 0.68 | 0.497556 |
Target: 5'- aGGgCAUGCGucGCCuccGGGCuGCCCGGc- -3' miRNA: 3'- gCCgGUACGCu-CGG---UCCG-CGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 99666 | 0.68 | 0.497556 |
Target: 5'- cCGGCgGcGCGGcGCCGacaGCGUCCGGUGa -3' miRNA: 3'- -GCCGgUaCGCU-CGGUc--CGCGGGCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 66644 | 0.68 | 0.497556 |
Target: 5'- uCGGCUucgGCGcGgUGGGCGCCCGGc- -3' miRNA: 3'- -GCCGGua-CGCuCgGUCCGCGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 189124 | 0.69 | 0.48868 |
Target: 5'- gGGCCcgGaCaAGCCGGcGCGUgCGGUGa -3' miRNA: 3'- gCCGGuaC-GcUCGGUC-CGCGgGCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 136400 | 0.69 | 0.48868 |
Target: 5'- aGGUCGguagccgGgGAGCUgguccuGGGgGCCCGGUGa -3' miRNA: 3'- gCCGGUa------CgCUCGG------UCCgCGGGCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 120150 | 0.69 | 0.462515 |
Target: 5'- gCGGCCGcgGCGAcGCCGGuggcacCGCCCGGc- -3' miRNA: 3'- -GCCGGUa-CGCU-CGGUCc-----GCGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 25901 | 0.7 | 0.428815 |
Target: 5'- aCGGCCccgGCGGGCCAGGCcauGCgCaGGUu -3' miRNA: 3'- -GCCGGua-CGCUCGGUCCG---CGgG-CCAc -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 45111 | 0.7 | 0.420618 |
Target: 5'- cCGGCCGcuccCGAGCCacccGGGCGCCCGc-- -3' miRNA: 3'- -GCCGGUac--GCUCGG----UCCGCGGGCcac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 197380 | 0.7 | 0.396606 |
Target: 5'- gGGCCGUgGCGAuGUugaCAGGCaGuCCCGGUGa -3' miRNA: 3'- gCCGGUA-CGCU-CG---GUCCG-C-GGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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