Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16222 | 3' | -64.1 | NC_004065.1 | + | 80381 | 0.71 | 0.373495 |
Target: 5'- gCGGCgCGUGCaGGGCCugccgacGGCGCCggugaCGGUGg -3' miRNA: 3'- -GCCG-GUACG-CUCGGu------CCGCGG-----GCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 71963 | 0.71 | 0.373495 |
Target: 5'- -cGCCgGUG-GAGCCGGGCaGCCCGGa- -3' miRNA: 3'- gcCGG-UACgCUCGGUCCG-CGGGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 199519 | 0.71 | 0.358604 |
Target: 5'- gCGGCCgccacGUGCGcgcAGCCGGGCGCcuccagCCGGg- -3' miRNA: 3'- -GCCGG-----UACGC---UCGGUCCGCG------GGCCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 163899 | 0.72 | 0.337057 |
Target: 5'- gCGGCCcaGCGcGCCA-GCGCCuCGGUGa -3' miRNA: 3'- -GCCGGuaCGCuCGGUcCGCGG-GCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 6159 | 0.72 | 0.330087 |
Target: 5'- cCGGCCGagaugGcCGGGCCGGGCGgCCGaGUa -3' miRNA: 3'- -GCCGGUa----C-GCUCGGUCCGCgGGC-CAc -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 125602 | 0.72 | 0.30916 |
Target: 5'- uGGCCGUGCGcGGCgGGucgaugcGCGCCUGGUa -3' miRNA: 3'- gCCGGUACGC-UCGgUC-------CGCGGGCCAc -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 122740 | 0.73 | 0.266256 |
Target: 5'- uGGCCGUGC--GUCGGGCGCCCaGGa- -3' miRNA: 3'- gCCGGUACGcuCGGUCCGCGGG-CCac -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 82767 | 0.75 | 0.217692 |
Target: 5'- aCGGCCucgGaGAG-CAGGCGUCCGGUGg -3' miRNA: 3'- -GCCGGua-CgCUCgGUCCGCGGGCCAC- -5' |
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16222 | 3' | -64.1 | NC_004065.1 | + | 211479 | 1.07 | 0.001095 |
Target: 5'- uCGGCCAUGCGAGCCAGGCGCCCGGUGa -3' miRNA: 3'- -GCCGGUACGCUCGGUCCGCGGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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