miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 6159 0.72 0.330087
Target:  5'- cCGGCCGagaugGcCGGGCCGGGCGgCCGaGUa -3'
miRNA:   3'- -GCCGGUa----C-GCUCGGUCCGCgGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 25901 0.7 0.428815
Target:  5'- aCGGCCccgGCGGGCCAGGCcauGCgCaGGUu -3'
miRNA:   3'- -GCCGGua-CGCUCGGUCCG---CGgG-CCAc -5'
16222 3' -64.1 NC_004065.1 + 27462 0.66 0.636903
Target:  5'- -cGCgCAUcacgcGCGAGCuCGGGUuccuGCCCGGUGu -3'
miRNA:   3'- gcCG-GUA-----CGCUCG-GUCCG----CGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 29493 0.66 0.64638
Target:  5'- uGGUCAgGCGuuCCAGGUaCUCGGUGa -3'
miRNA:   3'- gCCGGUaCGCucGGUCCGcGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 29683 0.66 0.655848
Target:  5'- cCGGCagguUGCuGAGCCucGGCGCCCcgacgggcuGGUa -3'
miRNA:   3'- -GCCGgu--ACG-CUCGGu-CCGCGGG---------CCAc -5'
16222 3' -64.1 NC_004065.1 + 29801 0.68 0.533738
Target:  5'- gGGCCGuuacacgcUGCucGGCCAGGuCGUCCGGa- -3'
miRNA:   3'- gCCGGU--------ACGc-UCGGUCC-GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 30474 0.66 0.635955
Target:  5'- gCGGCacgaugggGCGcGCCcggcuggAGGCGCCCGGcUGc -3'
miRNA:   3'- -GCCGgua-----CGCuCGG-------UCCGCGGGCC-AC- -5'
16222 3' -64.1 NC_004065.1 + 35095 0.68 0.510102
Target:  5'- gGGCUgucucuGUGCGAGCCGguguaucgagacggcGGCGCCgUGGUc -3'
miRNA:   3'- gCCGG------UACGCUCGGU---------------CCGCGG-GCCAc -5'
16222 3' -64.1 NC_004065.1 + 45111 0.7 0.420618
Target:  5'- cCGGCCGcuccCGAGCCacccGGGCGCCCGc-- -3'
miRNA:   3'- -GCCGGUac--GCUCGG----UCCGCGGGCcac -5'
16222 3' -64.1 NC_004065.1 + 51520 0.66 0.64638
Target:  5'- aGGCCAUGaCGAcGCCGucGCGUCCGaUGa -3'
miRNA:   3'- gCCGGUAC-GCU-CGGUc-CGCGGGCcAC- -5'
16222 3' -64.1 NC_004065.1 + 61719 0.66 0.665299
Target:  5'- gCGGCgGaUGCGAGCCAuGCGCUccuuggCGGg- -3'
miRNA:   3'- -GCCGgU-ACGCUCGGUcCGCGG------GCCac -5'
16222 3' -64.1 NC_004065.1 + 65217 0.67 0.570812
Target:  5'- aCGGCCAgagUGCcGGCgGuGGCGCCCGu-- -3'
miRNA:   3'- -GCCGGU---ACGcUCGgU-CCGCGGGCcac -5'
16222 3' -64.1 NC_004065.1 + 66644 0.68 0.497556
Target:  5'- uCGGCUucgGCGcGgUGGGCGCCCGGc- -3'
miRNA:   3'- -GCCGGua-CGCuCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 71963 0.71 0.373495
Target:  5'- -cGCCgGUG-GAGCCGGGCaGCCCGGa- -3'
miRNA:   3'- gcCGG-UACgCUCGGUCCG-CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 74134 0.67 0.561476
Target:  5'- aGGaCGU-CGAGgCGGGUGCCCGGg- -3'
miRNA:   3'- gCCgGUAcGCUCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 77984 0.66 0.617945
Target:  5'- uGGCCGcgGCGAGCC--GC-CCCGGg- -3'
miRNA:   3'- gCCGGUa-CGCUCGGucCGcGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 78656 0.66 0.665299
Target:  5'- uCGGCCGccaGCGcagcGGCC-GGCGCCgCGGc- -3'
miRNA:   3'- -GCCGGUa--CGC----UCGGuCCGCGG-GCCac -5'
16222 3' -64.1 NC_004065.1 + 80381 0.71 0.373495
Target:  5'- gCGGCgCGUGCaGGGCCugccgacGGCGCCggugaCGGUGg -3'
miRNA:   3'- -GCCG-GUACG-CUCGGu------CCGCGG-----GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 82767 0.75 0.217692
Target:  5'- aCGGCCucgGaGAG-CAGGCGUCCGGUGg -3'
miRNA:   3'- -GCCGGua-CgCUCgGUCCGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 94383 0.66 0.665299
Target:  5'- aCGGCCGcgGCGAGCUgu-CGgCUGGUGg -3'
miRNA:   3'- -GCCGGUa-CGCUCGGuccGCgGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.