miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 99666 0.68 0.497556
Target:  5'- cCGGCgGcGCGGcGCCGacaGCGUCCGGUGa -3'
miRNA:   3'- -GCCGgUaCGCU-CGGUc--CGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 107769 0.67 0.561476
Target:  5'- uGGCCGgcgGgGGGUUAGGacgcCGCCCGGa- -3'
miRNA:   3'- gCCGGUa--CgCUCGGUCC----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 109851 0.67 0.599024
Target:  5'- gGGCCAUcGCGcagguGCCGGGCGgugccaCCGGc- -3'
miRNA:   3'- gCCGGUA-CGCu----CGGUCCGCg-----GGCCac -5'
16222 3' -64.1 NC_004065.1 + 109908 0.66 0.617945
Target:  5'- aCGGCgCcgGCGAGUCAaGCGCCguaCGGa- -3'
miRNA:   3'- -GCCG-GuaCGCUCGGUcCGCGG---GCCac -5'
16222 3' -64.1 NC_004065.1 + 110834 0.66 0.636903
Target:  5'- aGGCaccaGUGCgGGGCgCGGGcCGCCCGcGUc -3'
miRNA:   3'- gCCGg---UACG-CUCG-GUCC-GCGGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 120150 0.69 0.462515
Target:  5'- gCGGCCGcgGCGAcGCCGGuggcacCGCCCGGc- -3'
miRNA:   3'- -GCCGGUa-CGCU-CGGUCc-----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 122740 0.73 0.266256
Target:  5'- uGGCCGUGC--GUCGGGCGCCCaGGa- -3'
miRNA:   3'- gCCGGUACGcuCGGUCCGCGGG-CCac -5'
16222 3' -64.1 NC_004065.1 + 124651 0.67 0.560545
Target:  5'- cCGGCCGUcaGCGAGuCCGGGUccGCCgucaggaagaacuUGGUGu -3'
miRNA:   3'- -GCCGGUA--CGCUC-GGUCCG--CGG-------------GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 125602 0.72 0.30916
Target:  5'- uGGCCGUGCGcGGCgGGucgaugcGCGCCUGGUa -3'
miRNA:   3'- gCCGGUACGC-UCGgUC-------CGCGGGCCAc -5'
16222 3' -64.1 NC_004065.1 + 136400 0.69 0.48868
Target:  5'- aGGUCGguagccgGgGAGCUgguccuGGGgGCCCGGUGa -3'
miRNA:   3'- gCCGGUa------CgCUCGG------UCCgCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 143291 0.67 0.580186
Target:  5'- gGGCCGagGCGGcGUCGGGgGCCgGGg- -3'
miRNA:   3'- gCCGGUa-CGCU-CGGUCCgCGGgCCac -5'
16222 3' -64.1 NC_004065.1 + 151160 0.67 0.608477
Target:  5'- uCGGCgAccGCGAGCU-GGCGCgCCGGc- -3'
miRNA:   3'- -GCCGgUa-CGCUCGGuCCGCG-GGCCac -5'
16222 3' -64.1 NC_004065.1 + 151525 0.66 0.636903
Target:  5'- aGGCCGcUGCcGGCCGGGCGgugUCGGg- -3'
miRNA:   3'- gCCGGU-ACGcUCGGUCCGCg--GGCCac -5'
16222 3' -64.1 NC_004065.1 + 158047 0.68 0.497556
Target:  5'- aGGgCAUGCGucGCCuccGGGCuGCCCGGc- -3'
miRNA:   3'- gCCgGUACGCu-CGG---UCCG-CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 163332 0.67 0.602803
Target:  5'- cCGGUCGaGCuccugucucuuggggGGGCUgugGGGgGCCCGGUGg -3'
miRNA:   3'- -GCCGGUaCG---------------CUCGG---UCCgCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 163639 0.68 0.54017
Target:  5'- uCGGUCA-GCGAGCgCAGccgcucgacgaucaGCGgCCGGUGu -3'
miRNA:   3'- -GCCGGUaCGCUCG-GUC--------------CGCgGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 163899 0.72 0.337057
Target:  5'- gCGGCCcaGCGcGCCA-GCGCCuCGGUGa -3'
miRNA:   3'- -GCCGGuaCGCuCGGUcCGCGG-GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 165699 0.67 0.561476
Target:  5'- gGGCCucGUGUGAGCCcGGCuGUCCcuugaccacGGUGa -3'
miRNA:   3'- gCCGG--UACGCUCGGuCCG-CGGG---------CCAC- -5'
16222 3' -64.1 NC_004065.1 + 169847 0.66 0.64638
Target:  5'- -cGCCGUGCGGGCCAGcGuCGaCCuGUGc -3'
miRNA:   3'- gcCGGUACGCUCGGUC-C-GCgGGcCAC- -5'
16222 3' -64.1 NC_004065.1 + 170315 0.66 0.655848
Target:  5'- -cGCCGUGCGccgcGGCCGcucGGCGCCCu--- -3'
miRNA:   3'- gcCGGUACGC----UCGGU---CCGCGGGccac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.