Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 184179 | 0.66 | 0.665299 |
|
Target: 5'- gCGGCCAUcGCGucCCGuGCGgCCGGUc -3' miRNA: 3'- -GCCGGUA-CGCucGGUcCGCgGGCCAc -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 186900 | 0.68 | 0.524599 |
|
Target: 5'- gCGGCCGgcggucuucGCGAGCgCGgaucGGCGCCgGGUc -3' miRNA: 3'- -GCCGGUa--------CGCUCG-GU----CCGCGGgCCAc -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 189124 | 0.69 | 0.48868 |
|
Target: 5'- gGGCCcgGaCaAGCCGGcGCGUgCGGUGa -3' miRNA: 3'- gCCGGuaC-GcUCGGUC-CGCGgGCCAC- -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 191237 | 0.68 | 0.506504 |
|
Target: 5'- gGGCUcUGCGGgcGCCAGaccgucaGCCCGGUGu -3' miRNA: 3'- gCCGGuACGCU--CGGUCcg-----CGGGCCAC- -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 195195 | 0.66 | 0.669074 |
|
Target: 5'- uCGGUgAUGaagagaguuugagauUGGGCCAGGUgguGCCCGGa- -3' miRNA: 3'- -GCCGgUAC---------------GCUCGGUCCG---CGGGCCac -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 197380 | 0.7 | 0.396606 |
|
Target: 5'- gGGCCGUgGCGAuGUugaCAGGCaGuCCCGGUGa -3' miRNA: 3'- gCCGGUA-CGCU-CG---GUCCG-C-GGGCCAC- -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 199519 | 0.71 | 0.358604 |
|
Target: 5'- gCGGCCgccacGUGCGcgcAGCCGGGCGCcuccagCCGGg- -3' miRNA: 3'- -GCCGG-----UACGC---UCGGUCCGCG------GGCCac -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 211479 | 1.07 | 0.001095 |
|
Target: 5'- uCGGCCAUGCGAGCCAGGCGCCCGGUGa -3' miRNA: 3'- -GCCGGUACGCUCGGUCCGCGGGCCAC- -5' |
|||||||
| 16222 | 3' | -64.1 | NC_004065.1 | + | 229469 | 0.68 | 0.552181 |
|
Target: 5'- aCGGCUcucCGGGCCGGGCGCCgcucgucgCGGa- -3' miRNA: 3'- -GCCGGuacGCUCGGUCCGCGG--------GCCac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home