miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 125602 0.72 0.30916
Target:  5'- uGGCCGUGCGcGGCgGGucgaugcGCGCCUGGUa -3'
miRNA:   3'- gCCGGUACGC-UCGgUC-------CGCGGGCCAc -5'
16222 3' -64.1 NC_004065.1 + 124651 0.67 0.560545
Target:  5'- cCGGCCGUcaGCGAGuCCGGGUccGCCgucaggaagaacuUGGUGu -3'
miRNA:   3'- -GCCGGUA--CGCUC-GGUCCG--CGG-------------GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 122740 0.73 0.266256
Target:  5'- uGGCCGUGC--GUCGGGCGCCCaGGa- -3'
miRNA:   3'- gCCGGUACGcuCGGUCCGCGGG-CCac -5'
16222 3' -64.1 NC_004065.1 + 120150 0.69 0.462515
Target:  5'- gCGGCCGcgGCGAcGCCGGuggcacCGCCCGGc- -3'
miRNA:   3'- -GCCGGUa-CGCU-CGGUCc-----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 110834 0.66 0.636903
Target:  5'- aGGCaccaGUGCgGGGCgCGGGcCGCCCGcGUc -3'
miRNA:   3'- gCCGg---UACG-CUCG-GUCC-GCGGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 109908 0.66 0.617945
Target:  5'- aCGGCgCcgGCGAGUCAaGCGCCguaCGGa- -3'
miRNA:   3'- -GCCG-GuaCGCUCGGUcCGCGG---GCCac -5'
16222 3' -64.1 NC_004065.1 + 109851 0.67 0.599024
Target:  5'- gGGCCAUcGCGcagguGCCGGGCGgugccaCCGGc- -3'
miRNA:   3'- gCCGGUA-CGCu----CGGUCCGCg-----GGCCac -5'
16222 3' -64.1 NC_004065.1 + 107769 0.67 0.561476
Target:  5'- uGGCCGgcgGgGGGUUAGGacgcCGCCCGGa- -3'
miRNA:   3'- gCCGGUa--CgCUCGGUCC----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 99666 0.68 0.497556
Target:  5'- cCGGCgGcGCGGcGCCGacaGCGUCCGGUGa -3'
miRNA:   3'- -GCCGgUaCGCU-CGGUc--CGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 94383 0.66 0.665299
Target:  5'- aCGGCCGcgGCGAGCUgu-CGgCUGGUGg -3'
miRNA:   3'- -GCCGGUa-CGCUCGGuccGCgGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 82767 0.75 0.217692
Target:  5'- aCGGCCucgGaGAG-CAGGCGUCCGGUGg -3'
miRNA:   3'- -GCCGGua-CgCUCgGUCCGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 80381 0.71 0.373495
Target:  5'- gCGGCgCGUGCaGGGCCugccgacGGCGCCggugaCGGUGg -3'
miRNA:   3'- -GCCG-GUACG-CUCGGu------CCGCGG-----GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 78656 0.66 0.665299
Target:  5'- uCGGCCGccaGCGcagcGGCC-GGCGCCgCGGc- -3'
miRNA:   3'- -GCCGGUa--CGC----UCGGuCCGCGG-GCCac -5'
16222 3' -64.1 NC_004065.1 + 77984 0.66 0.617945
Target:  5'- uGGCCGcgGCGAGCC--GC-CCCGGg- -3'
miRNA:   3'- gCCGGUa-CGCUCGGucCGcGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 74134 0.67 0.561476
Target:  5'- aGGaCGU-CGAGgCGGGUGCCCGGg- -3'
miRNA:   3'- gCCgGUAcGCUCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 71963 0.71 0.373495
Target:  5'- -cGCCgGUG-GAGCCGGGCaGCCCGGa- -3'
miRNA:   3'- gcCGG-UACgCUCGGUCCG-CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 66644 0.68 0.497556
Target:  5'- uCGGCUucgGCGcGgUGGGCGCCCGGc- -3'
miRNA:   3'- -GCCGGua-CGCuCgGUCCGCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 65217 0.67 0.570812
Target:  5'- aCGGCCAgagUGCcGGCgGuGGCGCCCGu-- -3'
miRNA:   3'- -GCCGGU---ACGcUCGgU-CCGCGGGCcac -5'
16222 3' -64.1 NC_004065.1 + 61719 0.66 0.665299
Target:  5'- gCGGCgGaUGCGAGCCAuGCGCUccuuggCGGg- -3'
miRNA:   3'- -GCCGgU-ACGCUCGGUcCGCGG------GCCac -5'
16222 3' -64.1 NC_004065.1 + 51520 0.66 0.64638
Target:  5'- aGGCCAUGaCGAcGCCGucGCGUCCGaUGa -3'
miRNA:   3'- gCCGGUAC-GCU-CGGUc-CGCGGGCcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.