miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 3' -64.1 NC_004065.1 + 211479 1.07 0.001095
Target:  5'- uCGGCCAUGCGAGCCAGGCGCCCGGUGa -3'
miRNA:   3'- -GCCGGUACGCUCGGUCCGCGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 151160 0.67 0.608477
Target:  5'- uCGGCgAccGCGAGCU-GGCGCgCCGGc- -3'
miRNA:   3'- -GCCGgUa-CGCUCGGuCCGCG-GGCCac -5'
16222 3' -64.1 NC_004065.1 + 77984 0.66 0.617945
Target:  5'- uGGCCGcgGCGAGCC--GC-CCCGGg- -3'
miRNA:   3'- gCCGGUa-CGCUCGGucCGcGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 27462 0.66 0.636903
Target:  5'- -cGCgCAUcacgcGCGAGCuCGGGUuccuGCCCGGUGu -3'
miRNA:   3'- gcCG-GUA-----CGCUCG-GUCCG----CGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 110834 0.66 0.636903
Target:  5'- aGGCaccaGUGCgGGGCgCGGGcCGCCCGcGUc -3'
miRNA:   3'- gCCGg---UACG-CUCG-GUCC-GCGGGC-CAc -5'
16222 3' -64.1 NC_004065.1 + 29493 0.66 0.64638
Target:  5'- uGGUCAgGCGuuCCAGGUaCUCGGUGa -3'
miRNA:   3'- gCCGGUaCGCucGGUCCGcGGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 51520 0.66 0.64638
Target:  5'- aGGCCAUGaCGAcGCCGucGCGUCCGaUGa -3'
miRNA:   3'- gCCGGUAC-GCU-CGGUc-CGCGGGCcAC- -5'
16222 3' -64.1 NC_004065.1 + 61719 0.66 0.665299
Target:  5'- gCGGCgGaUGCGAGCCAuGCGCUccuuggCGGg- -3'
miRNA:   3'- -GCCGgU-ACGCUCGGUcCGCGG------GCCac -5'
16222 3' -64.1 NC_004065.1 + 78656 0.66 0.665299
Target:  5'- uCGGCCGccaGCGcagcGGCC-GGCGCCgCGGc- -3'
miRNA:   3'- -GCCGGUa--CGC----UCGGuCCGCGG-GCCac -5'
16222 3' -64.1 NC_004065.1 + 109851 0.67 0.599024
Target:  5'- gGGCCAUcGCGcagguGCCGGGCGgugccaCCGGc- -3'
miRNA:   3'- gCCGGUA-CGCu----CGGUCCGCg-----GGCCac -5'
16222 3' -64.1 NC_004065.1 + 165699 0.67 0.561476
Target:  5'- gGGCCucGUGUGAGCCcGGCuGUCCcuugaccacGGUGa -3'
miRNA:   3'- gCCGG--UACGCUCGGuCCG-CGGG---------CCAC- -5'
16222 3' -64.1 NC_004065.1 + 107769 0.67 0.561476
Target:  5'- uGGCCGgcgGgGGGUUAGGacgcCGCCCGGa- -3'
miRNA:   3'- gCCGGUa--CgCUCGGUCC----GCGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 122740 0.73 0.266256
Target:  5'- uGGCCGUGC--GUCGGGCGCCCaGGa- -3'
miRNA:   3'- gCCGGUACGcuCGGUCCGCGGG-CCac -5'
16222 3' -64.1 NC_004065.1 + 125602 0.72 0.30916
Target:  5'- uGGCCGUGCGcGGCgGGucgaugcGCGCCUGGUa -3'
miRNA:   3'- gCCGGUACGC-UCGgUC-------CGCGGGCCAc -5'
16222 3' -64.1 NC_004065.1 + 199519 0.71 0.358604
Target:  5'- gCGGCCgccacGUGCGcgcAGCCGGGCGCcuccagCCGGg- -3'
miRNA:   3'- -GCCGG-----UACGC---UCGGUCCGCG------GGCCac -5'
16222 3' -64.1 NC_004065.1 + 71963 0.71 0.373495
Target:  5'- -cGCCgGUG-GAGCCGGGCaGCCCGGa- -3'
miRNA:   3'- gcCGG-UACgCUCGGUCCG-CGGGCCac -5'
16222 3' -64.1 NC_004065.1 + 197380 0.7 0.396606
Target:  5'- gGGCCGUgGCGAuGUugaCAGGCaGuCCCGGUGa -3'
miRNA:   3'- gCCGGUA-CGCU-CG---GUCCG-C-GGGCCAC- -5'
16222 3' -64.1 NC_004065.1 + 25901 0.7 0.428815
Target:  5'- aCGGCCccgGCGGGCCAGGCcauGCgCaGGUu -3'
miRNA:   3'- -GCCGGua-CGCUCGGUCCG---CGgG-CCAc -5'
16222 3' -64.1 NC_004065.1 + 124651 0.67 0.560545
Target:  5'- cCGGCCGUcaGCGAGuCCGGGUccGCCgucaggaagaacuUGGUGu -3'
miRNA:   3'- -GCCGGUA--CGCUC-GGUCCG--CGG-------------GCCAC- -5'
16222 3' -64.1 NC_004065.1 + 74134 0.67 0.561476
Target:  5'- aGGaCGU-CGAGgCGGGUGCCCGGg- -3'
miRNA:   3'- gCCgGUAcGCUCgGUCCGCGGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.