miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 139582 0.66 0.923138
Target:  5'- aGCACuCGGGAGguggCCGcgGCGAUCGCc-- -3'
miRNA:   3'- aCGUG-GUCCUCa---GGC--UGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 178203 0.66 0.923138
Target:  5'- aUGgAUCGGGAGUCCGccauccgGGCgGCGAAa -3'
miRNA:   3'- -ACgUGGUCCUCAGGCug-----CUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 65348 0.66 0.923138
Target:  5'- aGCugCGGGugggucGGUCgGAuCGACCugGGc -3'
miRNA:   3'- aCGugGUCC------UCAGgCU-GCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 31981 0.66 0.922605
Target:  5'- cGCAacuCCAuccccuuGGAaccgCCGGCGACCGCGAc -3'
miRNA:   3'- aCGU---GGU-------CCUca--GGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 26939 0.66 0.912059
Target:  5'- gGCucaAGGAccgcUCCGGCGGCCGCGGc -3'
miRNA:   3'- aCGuggUCCUc---AGGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 182439 0.66 0.912059
Target:  5'- gGCAgCCGGGGGUCCugguGACGuagccucuggGCCugGGu -3'
miRNA:   3'- aCGU-GGUCCUCAGG----CUGC----------UGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 136997 0.66 0.912059
Target:  5'- gGCGCCAGGAacagCGAgGGCgACGAGa -3'
miRNA:   3'- aCGUGGUCCUcag-GCUgCUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 143119 0.66 0.906186
Target:  5'- cGCGCCgccgagGGcGAGaCCGGCG-CCGCGAc -3'
miRNA:   3'- aCGUGG------UC-CUCaGGCUGCuGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 173962 0.66 0.906186
Target:  5'- cGcCAUCGGGguGGUCC-ACGACCugGGg -3'
miRNA:   3'- aC-GUGGUCC--UCAGGcUGCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 118252 0.66 0.906186
Target:  5'- gGaCGCguGGAGcucgCCGGCGGCCuCGAc -3'
miRNA:   3'- aC-GUGguCCUCa---GGCUGCUGGuGCUu -5'
16222 5' -57.5 NC_004065.1 + 178128 0.66 0.906186
Target:  5'- aGCGUCAGGAagCCGGCGAUgGCGGu -3'
miRNA:   3'- aCGUGGUCCUcaGGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 78037 0.66 0.900092
Target:  5'- gUGCGCCGGGucccugaugAGgCCGGCGggGCgCACGAAc -3'
miRNA:   3'- -ACGUGGUCC---------UCaGGCUGC--UG-GUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 48460 0.66 0.900092
Target:  5'- gGCugCAGGAGg-UGACGgugccguagucGCCGCGAu -3'
miRNA:   3'- aCGugGUCCUCagGCUGC-----------UGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 53324 0.66 0.900092
Target:  5'- aGCACCAcGGAcaaaaccaCGGCGAUCAUGAAg -3'
miRNA:   3'- aCGUGGU-CCUcag-----GCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 162428 0.66 0.900092
Target:  5'- cUGCACCAGcAGcUCCGACGGCgA-GAu -3'
miRNA:   3'- -ACGUGGUCcUC-AGGCUGCUGgUgCUu -5'
16222 5' -57.5 NC_004065.1 + 41209 0.66 0.900092
Target:  5'- gGCACCAGGAauacaUCCGAaaCGugCGCa-- -3'
miRNA:   3'- aCGUGGUCCUc----AGGCU--GCugGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 90529 0.66 0.898221
Target:  5'- gGUGCgGGGAGUacuucucgucccgcCCGACGGCCcccuCGAAc -3'
miRNA:   3'- aCGUGgUCCUCA--------------GGCUGCUGGu---GCUU- -5'
16222 5' -57.5 NC_004065.1 + 28012 0.66 0.89378
Target:  5'- aGCGCCgAGGAGgacgCCaucgcguuGGCGGCCaACGAc -3'
miRNA:   3'- aCGUGG-UCCUCa---GG--------CUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 44780 0.66 0.89378
Target:  5'- cGCGcCCGGGAacguuGUCCGACGugUccuccgauACGGAu -3'
miRNA:   3'- aCGU-GGUCCU-----CAGGCUGCugG--------UGCUU- -5'
16222 5' -57.5 NC_004065.1 + 204510 0.66 0.89378
Target:  5'- -uCGCCuuuuacgggaGGGAGUCCGGCGACCu---- -3'
miRNA:   3'- acGUGG----------UCCUCAGGCUGCUGGugcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.