Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16222 | 5' | -57.5 | NC_004065.1 | + | 120054 | 0.7 | 0.729606 |
Target: 5'- aGCGCCAGGAcgucGUCgGA-GACCGCGc- -3' miRNA: 3'- aCGUGGUCCU----CAGgCUgCUGGUGCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 192536 | 0.7 | 0.729606 |
Target: 5'- aGcCGCCAGGGGUCCGcACaGCCcuGCGGGa -3' miRNA: 3'- aC-GUGGUCCUCAGGC-UGcUGG--UGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 35685 | 0.7 | 0.700692 |
Target: 5'- cGCgaGCCAGGAGaUCgCGcgucGCGACCugGAAg -3' miRNA: 3'- aCG--UGGUCCUC-AG-GC----UGCUGGugCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 163292 | 0.72 | 0.601989 |
Target: 5'- cGcCGCCGGG-GUCCGACGG-CACGGg -3' miRNA: 3'- aC-GUGGUCCuCAGGCUGCUgGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 200408 | 0.72 | 0.592117 |
Target: 5'- cUGCGCCAGGAagauGUCCGcgaaguccugcAgGACCGCGGu -3' miRNA: 3'- -ACGUGGUCCU----CAGGC-----------UgCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 108939 | 0.72 | 0.611882 |
Target: 5'- cUGCGCCugcGGcAGUacgCCGACGACCugGGg -3' miRNA: 3'- -ACGUGGu--CC-UCA---GGCUGCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 61681 | 0.72 | 0.641618 |
Target: 5'- aGCGCgAGGGGUCCGcagcgcgucACGuCCGCGGc -3' miRNA: 3'- aCGUGgUCCUCAGGC---------UGCuGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 83559 | 0.72 | 0.631703 |
Target: 5'- aGCGCCAgggcacGGAGUagaCGGCGACgGCGGGg -3' miRNA: 3'- aCGUGGU------CCUCAg--GCUGCUGgUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 17654 | 0.73 | 0.582273 |
Target: 5'- gGCACC-GGAGUCggaUGACGACCgACGGu -3' miRNA: 3'- aCGUGGuCCUCAG---GCUGCUGG-UGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 194864 | 0.74 | 0.477408 |
Target: 5'- gGUGCCAGGAGUCaCGGCGAucugaUCGCGGu -3' miRNA: 3'- aCGUGGUCCUCAG-GCUGCU-----GGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 194070 | 0.74 | 0.477408 |
Target: 5'- aGCAgCGGcgcGAGUCCGACGACCuGCGGc -3' miRNA: 3'- aCGUgGUC---CUCAGGCUGCUGG-UGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 118669 | 0.74 | 0.514624 |
Target: 5'- aGCGCCGacgaugaaggcGGAGaUCCaGGCGACCACGGu -3' miRNA: 3'- aCGUGGU-----------CCUC-AGG-CUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 31049 | 0.77 | 0.344016 |
Target: 5'- aGCGCCAGGAGUCUGuuGACgGCGu- -3' miRNA: 3'- aCGUGGUCCUCAGGCugCUGgUGCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 25478 | 0.77 | 0.339564 |
Target: 5'- aGCACCucccgccgcccgacgAGGcGUCUGGCGACCACGAc -3' miRNA: 3'- aCGUGG---------------UCCuCAGGCUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 211514 | 1.06 | 0.005059 |
Target: 5'- gUGCACCAGGAGUCCGACGACCACGAAu -3' miRNA: 3'- -ACGUGGUCCUCAGGCUGCUGGUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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