miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 102558 0.7 0.729606
Target:  5'- gGCGCCGGGgucgGGUCCcGCGGCCAUc-- -3'
miRNA:   3'- aCGUGGUCC----UCAGGcUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 4364 0.7 0.7485
Target:  5'- cUGCGCguGGAG-CgCGACGGCgGCGGc -3'
miRNA:   3'- -ACGUGguCCUCaG-GCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 22505 0.7 0.7485
Target:  5'- cGCgGCgAGGAGgaCCGACGACCGCu-- -3'
miRNA:   3'- aCG-UGgUCCUCa-GGCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 152174 0.69 0.757808
Target:  5'- gUGCACCGGGGagcccacgccgcGUCCGGaGACCugGu- -3'
miRNA:   3'- -ACGUGGUCCU------------CAGGCUgCUGGugCuu -5'
16222 5' -57.5 NC_004065.1 + 72683 0.69 0.757808
Target:  5'- gGCACCuGGAGaaccugCCGAgCGACC-CGGAc -3'
miRNA:   3'- aCGUGGuCCUCa-----GGCU-GCUGGuGCUU- -5'
16222 5' -57.5 NC_004065.1 + 110575 0.69 0.767011
Target:  5'- -cCGCCAGGcgucGGUCuCGGCGACCACc-- -3'
miRNA:   3'- acGUGGUCC----UCAG-GCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 195226 0.69 0.770661
Target:  5'- aGCACgAGGGGcuugCCGagguagugcaccaccGCGGCCGCGAu -3'
miRNA:   3'- aCGUGgUCCUCa---GGC---------------UGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 149703 0.69 0.785072
Target:  5'- -aCGCCGGGGGgCCG-CGGCCGCGc- -3'
miRNA:   3'- acGUGGUCCUCaGGCuGCUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 44770 0.69 0.785072
Target:  5'- cGgGCCAGGGucGUCCGA-GGCCugGGc -3'
miRNA:   3'- aCgUGGUCCU--CAGGCUgCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 213400 0.69 0.793912
Target:  5'- cUGCACUAGGGGUugccgCCGAagaGAUCGCGu- -3'
miRNA:   3'- -ACGUGGUCCUCA-----GGCUg--CUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 197767 0.69 0.802616
Target:  5'- gGCACUcGGAgccGUCCGAUGAUgGCGGc -3'
miRNA:   3'- aCGUGGuCCU---CAGGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 90380 0.69 0.802616
Target:  5'- cGCGCCGcacagcuuGGAG-CCGGCGuuCACGAu -3'
miRNA:   3'- aCGUGGU--------CCUCaGGCUGCugGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 139842 0.69 0.802616
Target:  5'- aGUcCCGGGAGgCgGGCGACgGCGGAg -3'
miRNA:   3'- aCGuGGUCCUCaGgCUGCUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 108494 0.68 0.811175
Target:  5'- cUGCAUCGuGGuccucgUCGACGACCGCGAc -3'
miRNA:   3'- -ACGUGGU-CCuca---GGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 34584 0.68 0.811175
Target:  5'- cGgACUcGGAccuGUCCGACGACgGCGAc -3'
miRNA:   3'- aCgUGGuCCU---CAGGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 180340 0.68 0.819582
Target:  5'- cGuCAUCAGGAGggacgccugcUCCGGCGgcaccGCCACGGGa -3'
miRNA:   3'- aC-GUGGUCCUC----------AGGCUGC-----UGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 35982 0.68 0.827828
Target:  5'- cGCGCCAuGGAcauGUUCGACGGCgGCa-- -3'
miRNA:   3'- aCGUGGU-CCU---CAGGCUGCUGgUGcuu -5'
16222 5' -57.5 NC_004065.1 + 96548 0.68 0.83108
Target:  5'- cUGgACgAGGAGUcgcuggacucguccgCCGACGAgCCGCGAc -3'
miRNA:   3'- -ACgUGgUCCUCA---------------GGCUGCU-GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 106038 0.68 0.833502
Target:  5'- aGCGCCAuGAGgaucgCuaugaucaccaaagCGACGACCACGGAg -3'
miRNA:   3'- aCGUGGUcCUCa----G--------------GCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 20694 0.68 0.84146
Target:  5'- gGCACCGGGcaguccccAGUagcacacgacggcaCCGACGGCgACGAc -3'
miRNA:   3'- aCGUGGUCC--------UCA--------------GGCUGCUGgUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.