Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16222 | 5' | -57.5 | NC_004065.1 | + | 48460 | 0.66 | 0.900092 |
Target: 5'- gGCugCAGGAGg-UGACGgugccguagucGCCGCGAu -3' miRNA: 3'- aCGugGUCCUCagGCUGC-----------UGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 53324 | 0.66 | 0.900092 |
Target: 5'- aGCACCAcGGAcaaaaccaCGGCGAUCAUGAAg -3' miRNA: 3'- aCGUGGU-CCUcag-----GCUGCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 78037 | 0.66 | 0.900092 |
Target: 5'- gUGCGCCGGGucccugaugAGgCCGGCGggGCgCACGAAc -3' miRNA: 3'- -ACGUGGUCC---------UCaGGCUGC--UG-GUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 41209 | 0.66 | 0.900092 |
Target: 5'- gGCACCAGGAauacaUCCGAaaCGugCGCa-- -3' miRNA: 3'- aCGUGGUCCUc----AGGCU--GCugGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 143119 | 0.66 | 0.906186 |
Target: 5'- cGCGCCgccgagGGcGAGaCCGGCG-CCGCGAc -3' miRNA: 3'- aCGUGG------UC-CUCaGGCUGCuGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 178128 | 0.66 | 0.906186 |
Target: 5'- aGCGUCAGGAagCCGGCGAUgGCGGu -3' miRNA: 3'- aCGUGGUCCUcaGGCUGCUGgUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 118252 | 0.66 | 0.906186 |
Target: 5'- gGaCGCguGGAGcucgCCGGCGGCCuCGAc -3' miRNA: 3'- aC-GUGguCCUCa---GGCUGCUGGuGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 173962 | 0.66 | 0.906186 |
Target: 5'- cGcCAUCGGGguGGUCC-ACGACCugGGg -3' miRNA: 3'- aC-GUGGUCC--UCAGGcUGCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 136997 | 0.66 | 0.912059 |
Target: 5'- gGCGCCAGGAacagCGAgGGCgACGAGa -3' miRNA: 3'- aCGUGGUCCUcag-GCUgCUGgUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 182439 | 0.66 | 0.912059 |
Target: 5'- gGCAgCCGGGGGUCCugguGACGuagccucuggGCCugGGu -3' miRNA: 3'- aCGU-GGUCCUCAGG----CUGC----------UGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 26939 | 0.66 | 0.912059 |
Target: 5'- gGCucaAGGAccgcUCCGGCGGCCGCGGc -3' miRNA: 3'- aCGuggUCCUc---AGGCUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 31981 | 0.66 | 0.922605 |
Target: 5'- cGCAacuCCAuccccuuGGAaccgCCGGCGACCGCGAc -3' miRNA: 3'- aCGU---GGU-------CCUca--GGCUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 139582 | 0.66 | 0.923138 |
Target: 5'- aGCACuCGGGAGguggCCGcgGCGAUCGCc-- -3' miRNA: 3'- aCGUG-GUCCUCa---GGC--UGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 65348 | 0.66 | 0.923138 |
Target: 5'- aGCugCGGGugggucGGUCgGAuCGACCugGGc -3' miRNA: 3'- aCGugGUCC------UCAGgCU-GCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 178203 | 0.66 | 0.923138 |
Target: 5'- aUGgAUCGGGAGUCCGccauccgGGCgGCGAAa -3' miRNA: 3'- -ACgUGGUCCUCAGGCug-----CUGgUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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