miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 28012 0.66 0.89378
Target:  5'- aGCGCCgAGGAGgacgCCaucgcguuGGCGGCCaACGAc -3'
miRNA:   3'- aCGUGG-UCCUCa---GG--------CUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 134694 0.67 0.887254
Target:  5'- -cUACCGGGAGUUCGAgGGCCuGCa-- -3'
miRNA:   3'- acGUGGUCCUCAGGCUgCUGG-UGcuu -5'
16222 5' -57.5 NC_004065.1 + 66859 0.67 0.887254
Target:  5'- cGUGCCGGGAaaucgCCGaACGACCugcGCGAGu -3'
miRNA:   3'- aCGUGGUCCUca---GGC-UGCUGG---UGCUU- -5'
16222 5' -57.5 NC_004065.1 + 198628 0.67 0.880516
Target:  5'- cUGCGCCAGG-GUCC--CGGCCGaGAGg -3'
miRNA:   3'- -ACGUGGUCCuCAGGcuGCUGGUgCUU- -5'
16222 5' -57.5 NC_004065.1 + 123045 0.67 0.873571
Target:  5'- cUGCGCCuuccgcucGGGAGgacCCGcuCGAUCACGAGu -3'
miRNA:   3'- -ACGUGG--------UCCUCa--GGCu-GCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 25757 0.67 0.873571
Target:  5'- aGgACCAGGGuGUCguCGGCGACCuuGAGu -3'
miRNA:   3'- aCgUGGUCCU-CAG--GCUGCUGGugCUU- -5'
16222 5' -57.5 NC_004065.1 + 161984 0.67 0.858331
Target:  5'- gUGCGCCAGcAG-CUGGCGGCCcacguccACGAAg -3'
miRNA:   3'- -ACGUGGUCcUCaGGCUGCUGG-------UGCUU- -5'
16222 5' -57.5 NC_004065.1 + 82605 0.68 0.851538
Target:  5'- aGCACCAGGu---UGACGACCugGu- -3'
miRNA:   3'- aCGUGGUCCucagGCUGCUGGugCuu -5'
16222 5' -57.5 NC_004065.1 + 36543 0.68 0.851538
Target:  5'- cGCuaaCGGGcauccGUCCGGCGcCCGCGAAg -3'
miRNA:   3'- aCGug-GUCCu----CAGGCUGCuGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 120452 0.68 0.851538
Target:  5'- cGcCGCCAGGAGaCaGGCGGCCACc-- -3'
miRNA:   3'- aC-GUGGUCCUCaGgCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 173198 0.68 0.84924
Target:  5'- gGCACCucguGGAcgagauuggucuccGUCCGACGAucUCACGGc -3'
miRNA:   3'- aCGUGGu---CCU--------------CAGGCUGCU--GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 229565 0.68 0.843813
Target:  5'- cGC-CCAGG-GUCCccgGACGuuacGCCGCGAGg -3'
miRNA:   3'- aCGuGGUCCuCAGG---CUGC----UGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 224702 0.68 0.843813
Target:  5'- gGCugCAGGGGUgUCGAC--CCACGGAu -3'
miRNA:   3'- aCGugGUCCUCA-GGCUGcuGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 80294 0.68 0.843813
Target:  5'- cGCGCUGGaccgcuauGAGUCCGagggccggcGCGGCCGCGGc -3'
miRNA:   3'- aCGUGGUC--------CUCAGGC---------UGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 76754 0.68 0.843031
Target:  5'- gGCGCCGGcGGccucgucaucGUCCGGCGcaucgccGCCGCGAc -3'
miRNA:   3'- aCGUGGUC-CU----------CAGGCUGC-------UGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 20694 0.68 0.84146
Target:  5'- gGCACCGGGcaguccccAGUagcacacgacggcaCCGACGGCgACGAc -3'
miRNA:   3'- aCGUGGUCC--------UCA--------------GGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 106038 0.68 0.833502
Target:  5'- aGCGCCAuGAGgaucgCuaugaucaccaaagCGACGACCACGGAg -3'
miRNA:   3'- aCGUGGUcCUCa----G--------------GCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 96548 0.68 0.83108
Target:  5'- cUGgACgAGGAGUcgcuggacucguccgCCGACGAgCCGCGAc -3'
miRNA:   3'- -ACgUGgUCCUCA---------------GGCUGCU-GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 35982 0.68 0.827828
Target:  5'- cGCGCCAuGGAcauGUUCGACGGCgGCa-- -3'
miRNA:   3'- aCGUGGU-CCU---CAGGCUGCUGgUGcuu -5'
16222 5' -57.5 NC_004065.1 + 180340 0.68 0.819582
Target:  5'- cGuCAUCAGGAGggacgccugcUCCGGCGgcaccGCCACGGGa -3'
miRNA:   3'- aC-GUGGUCCUC----------AGGCUGC-----UGGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.