miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 107517 0.7 0.700692
Target:  5'- cGCACgAGGAGgugcgCgCGGCGACCGCc-- -3'
miRNA:   3'- aCGUGgUCCUCa----G-GCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 1003 0.7 0.700692
Target:  5'- cGCugCGGGAGgCCGA-GugCGCGAu -3'
miRNA:   3'- aCGugGUCCUCaGGCUgCugGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 35685 0.7 0.700692
Target:  5'- cGCgaGCCAGGAGaUCgCGcgucGCGACCugGAAg -3'
miRNA:   3'- aCG--UGGUCCUC-AG-GC----UGCUGGugCUU- -5'
16222 5' -57.5 NC_004065.1 + 61681 0.72 0.641618
Target:  5'- aGCGCgAGGGGUCCGcagcgcgucACGuCCGCGGc -3'
miRNA:   3'- aCGUGgUCCUCAGGC---------UGCuGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 83559 0.72 0.631703
Target:  5'- aGCGCCAgggcacGGAGUagaCGGCGACgGCGGGg -3'
miRNA:   3'- aCGUGGU------CCUCAg--GCUGCUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 108939 0.72 0.611882
Target:  5'- cUGCGCCugcGGcAGUacgCCGACGACCugGGg -3'
miRNA:   3'- -ACGUGGu--CC-UCA---GGCUGCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 163292 0.72 0.601989
Target:  5'- cGcCGCCGGG-GUCCGACGG-CACGGg -3'
miRNA:   3'- aC-GUGGUCCuCAGGCUGCUgGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 200408 0.72 0.592117
Target:  5'- cUGCGCCAGGAagauGUCCGcgaaguccugcAgGACCGCGGu -3'
miRNA:   3'- -ACGUGGUCCU----CAGGC-----------UgCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 17654 0.73 0.582273
Target:  5'- gGCACC-GGAGUCggaUGACGACCgACGGu -3'
miRNA:   3'- aCGUGGuCCUCAG---GCUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 118669 0.74 0.514624
Target:  5'- aGCGCCGacgaugaaggcGGAGaUCCaGGCGACCACGGu -3'
miRNA:   3'- aCGUGGU-----------CCUC-AGG-CUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 194070 0.74 0.477408
Target:  5'- aGCAgCGGcgcGAGUCCGACGACCuGCGGc -3'
miRNA:   3'- aCGUgGUC---CUCAGGCUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 194864 0.74 0.477408
Target:  5'- gGUGCCAGGAGUCaCGGCGAucugaUCGCGGu -3'
miRNA:   3'- aCGUGGUCCUCAG-GCUGCU-----GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 31049 0.77 0.344016
Target:  5'- aGCGCCAGGAGUCUGuuGACgGCGu- -3'
miRNA:   3'- aCGUGGUCCUCAGGCugCUGgUGCuu -5'
16222 5' -57.5 NC_004065.1 + 25478 0.77 0.339564
Target:  5'- aGCACCucccgccgcccgacgAGGcGUCUGGCGACCACGAc -3'
miRNA:   3'- aCGUGG---------------UCCuCAGGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 211514 1.06 0.005059
Target:  5'- gUGCACCAGGAGUCCGACGACCACGAAu -3'
miRNA:   3'- -ACGUGGUCCUCAGGCUGCUGGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.