miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 61681 0.72 0.641618
Target:  5'- aGCGCgAGGGGUCCGcagcgcgucACGuCCGCGGc -3'
miRNA:   3'- aCGUGgUCCUCAGGC---------UGCuGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 62392 0.7 0.710395
Target:  5'- gGCGgCGGGGGU--GGCGGCCGCGGAu -3'
miRNA:   3'- aCGUgGUCCUCAggCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 65348 0.66 0.923138
Target:  5'- aGCugCGGGugggucGGUCgGAuCGACCugGGc -3'
miRNA:   3'- aCGugGUCC------UCAGgCU-GCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 66859 0.67 0.887254
Target:  5'- cGUGCCGGGAaaucgCCGaACGACCugcGCGAGu -3'
miRNA:   3'- aCGUGGUCCUca---GGC-UGCUGG---UGCUU- -5'
16222 5' -57.5 NC_004065.1 + 70677 0.7 0.729606
Target:  5'- cGCAUCAGGcuGcCCGAgGGCCugGAc -3'
miRNA:   3'- aCGUGGUCCu-CaGGCUgCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 72683 0.69 0.757808
Target:  5'- gGCACCuGGAGaaccugCCGAgCGACC-CGGAc -3'
miRNA:   3'- aCGUGGuCCUCa-----GGCU-GCUGGuGCUU- -5'
16222 5' -57.5 NC_004065.1 + 76754 0.68 0.843031
Target:  5'- gGCGCCGGcGGccucgucaucGUCCGGCGcaucgccGCCGCGAc -3'
miRNA:   3'- aCGUGGUC-CU----------CAGGCUGC-------UGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 78037 0.66 0.900092
Target:  5'- gUGCGCCGGGucccugaugAGgCCGGCGggGCgCACGAAc -3'
miRNA:   3'- -ACGUGGUCC---------UCaGGCUGC--UG-GUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 80294 0.68 0.843813
Target:  5'- cGCGCUGGaccgcuauGAGUCCGagggccggcGCGGCCGCGGc -3'
miRNA:   3'- aCGUGGUC--------CUCAGGC---------UGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 82605 0.68 0.851538
Target:  5'- aGCACCAGGu---UGACGACCugGu- -3'
miRNA:   3'- aCGUGGUCCucagGCUGCUGGugCuu -5'
16222 5' -57.5 NC_004065.1 + 83559 0.72 0.631703
Target:  5'- aGCGCCAgggcacGGAGUagaCGGCGACgGCGGGg -3'
miRNA:   3'- aCGUGGU------CCUCAg--GCUGCUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 90380 0.69 0.802616
Target:  5'- cGCGCCGcacagcuuGGAG-CCGGCGuuCACGAu -3'
miRNA:   3'- aCGUGGU--------CCUCaGGCUGCugGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 90529 0.66 0.898221
Target:  5'- gGUGCgGGGAGUacuucucgucccgcCCGACGGCCcccuCGAAc -3'
miRNA:   3'- aCGUGgUCCUCA--------------GGCUGCUGGu---GCUU- -5'
16222 5' -57.5 NC_004065.1 + 96548 0.68 0.83108
Target:  5'- cUGgACgAGGAGUcgcuggacucguccgCCGACGAgCCGCGAc -3'
miRNA:   3'- -ACgUGgUCCUCA---------------GGCUGCU-GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 102558 0.7 0.729606
Target:  5'- gGCGCCGGGgucgGGUCCcGCGGCCAUc-- -3'
miRNA:   3'- aCGUGGUCC----UCAGGcUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 106038 0.68 0.833502
Target:  5'- aGCGCCAuGAGgaucgCuaugaucaccaaagCGACGACCACGGAg -3'
miRNA:   3'- aCGUGGUcCUCa----G--------------GCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 107517 0.7 0.700692
Target:  5'- cGCACgAGGAGgugcgCgCGGCGACCGCc-- -3'
miRNA:   3'- aCGUGgUCCUCa----G-GCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 108494 0.68 0.811175
Target:  5'- cUGCAUCGuGGuccucgUCGACGACCGCGAc -3'
miRNA:   3'- -ACGUGGU-CCuca---GGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 108939 0.72 0.611882
Target:  5'- cUGCGCCugcGGcAGUacgCCGACGACCugGGg -3'
miRNA:   3'- -ACGUGGu--CC-UCA---GGCUGCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 109864 0.66 0.89378
Target:  5'- gGUGCCGGGcGGUgccaCCGGCGucGCCGCGGc -3'
miRNA:   3'- aCGUGGUCC-UCA----GGCUGC--UGGUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.