miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 110575 0.69 0.767011
Target:  5'- -cCGCCAGGcgucGGUCuCGGCGACCACc-- -3'
miRNA:   3'- acGUGGUCC----UCAG-GCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 118252 0.66 0.906186
Target:  5'- gGaCGCguGGAGcucgCCGGCGGCCuCGAc -3'
miRNA:   3'- aC-GUGguCCUCa---GGCUGCUGGuGCUu -5'
16222 5' -57.5 NC_004065.1 + 118669 0.74 0.514624
Target:  5'- aGCGCCGacgaugaaggcGGAGaUCCaGGCGACCACGGu -3'
miRNA:   3'- aCGUGGU-----------CCUC-AGG-CUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 120054 0.7 0.729606
Target:  5'- aGCGCCAGGAcgucGUCgGA-GACCGCGc- -3'
miRNA:   3'- aCGUGGUCCU----CAGgCUgCUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 120452 0.68 0.851538
Target:  5'- cGcCGCCAGGAGaCaGGCGGCCACc-- -3'
miRNA:   3'- aC-GUGGUCCUCaGgCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 123045 0.67 0.873571
Target:  5'- cUGCGCCuuccgcucGGGAGgacCCGcuCGAUCACGAGu -3'
miRNA:   3'- -ACGUGG--------UCCUCa--GGCu-GCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 127211 0.7 0.710395
Target:  5'- gUGguUCGGGAG--CGGCGGCCGCGAGg -3'
miRNA:   3'- -ACguGGUCCUCagGCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 134694 0.67 0.887254
Target:  5'- -cUACCGGGAGUUCGAgGGCCuGCa-- -3'
miRNA:   3'- acGUGGUCCUCAGGCUgCUGG-UGcuu -5'
16222 5' -57.5 NC_004065.1 + 136997 0.66 0.912059
Target:  5'- gGCGCCAGGAacagCGAgGGCgACGAGa -3'
miRNA:   3'- aCGUGGUCCUcag-GCUgCUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 139582 0.66 0.923138
Target:  5'- aGCACuCGGGAGguggCCGcgGCGAUCGCc-- -3'
miRNA:   3'- aCGUG-GUCCUCa---GGC--UGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 139842 0.69 0.802616
Target:  5'- aGUcCCGGGAGgCgGGCGACgGCGGAg -3'
miRNA:   3'- aCGuGGUCCUCaGgCUGCUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 143119 0.66 0.906186
Target:  5'- cGCGCCgccgagGGcGAGaCCGGCG-CCGCGAc -3'
miRNA:   3'- aCGUGG------UC-CUCaGGCUGCuGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 149703 0.69 0.785072
Target:  5'- -aCGCCGGGGGgCCG-CGGCCGCGc- -3'
miRNA:   3'- acGUGGUCCUCaGGCuGCUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 152174 0.69 0.757808
Target:  5'- gUGCACCGGGGagcccacgccgcGUCCGGaGACCugGu- -3'
miRNA:   3'- -ACGUGGUCCU------------CAGGCUgCUGGugCuu -5'
16222 5' -57.5 NC_004065.1 + 161984 0.67 0.858331
Target:  5'- gUGCGCCAGcAG-CUGGCGGCCcacguccACGAAg -3'
miRNA:   3'- -ACGUGGUCcUCaGGCUGCUGG-------UGCUU- -5'
16222 5' -57.5 NC_004065.1 + 162428 0.66 0.900092
Target:  5'- cUGCACCAGcAGcUCCGACGGCgA-GAu -3'
miRNA:   3'- -ACGUGGUCcUC-AGGCUGCUGgUgCUu -5'
16222 5' -57.5 NC_004065.1 + 163292 0.72 0.601989
Target:  5'- cGcCGCCGGG-GUCCGACGG-CACGGg -3'
miRNA:   3'- aC-GUGGUCCuCAGGCUGCUgGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 173198 0.68 0.84924
Target:  5'- gGCACCucguGGAcgagauuggucuccGUCCGACGAucUCACGGc -3'
miRNA:   3'- aCGUGGu---CCU--------------CAGGCUGCU--GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 173962 0.66 0.906186
Target:  5'- cGcCAUCGGGguGGUCC-ACGACCugGGg -3'
miRNA:   3'- aC-GUGGUCC--UCAGGcUGCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 178128 0.66 0.906186
Target:  5'- aGCGUCAGGAagCCGGCGAUgGCGGu -3'
miRNA:   3'- aCGUGGUCCUcaGGCUGCUGgUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.