miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 229565 0.68 0.843813
Target:  5'- cGC-CCAGG-GUCCccgGACGuuacGCCGCGAGg -3'
miRNA:   3'- aCGuGGUCCuCAGG---CUGC----UGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 224702 0.68 0.843813
Target:  5'- gGCugCAGGGGUgUCGAC--CCACGGAu -3'
miRNA:   3'- aCGugGUCCUCA-GGCUGcuGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 213400 0.69 0.793912
Target:  5'- cUGCACUAGGGGUugccgCCGAagaGAUCGCGu- -3'
miRNA:   3'- -ACGUGGUCCUCA-----GGCUg--CUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 211514 1.06 0.005059
Target:  5'- gUGCACCAGGAGUCCGACGACCACGAAu -3'
miRNA:   3'- -ACGUGGUCCUCAGGCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 204510 0.66 0.89378
Target:  5'- -uCGCCuuuuacgggaGGGAGUCCGGCGACCu---- -3'
miRNA:   3'- acGUGG----------UCCUCAGGCUGCUGGugcuu -5'
16222 5' -57.5 NC_004065.1 + 200408 0.72 0.592117
Target:  5'- cUGCGCCAGGAagauGUCCGcgaaguccugcAgGACCGCGGu -3'
miRNA:   3'- -ACGUGGUCCU----CAGGC-----------UgCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 198628 0.67 0.880516
Target:  5'- cUGCGCCAGG-GUCC--CGGCCGaGAGg -3'
miRNA:   3'- -ACGUGGUCCuCAGGcuGCUGGUgCUU- -5'
16222 5' -57.5 NC_004065.1 + 197767 0.69 0.802616
Target:  5'- gGCACUcGGAgccGUCCGAUGAUgGCGGc -3'
miRNA:   3'- aCGUGGuCCU---CAGGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 195226 0.69 0.770661
Target:  5'- aGCACgAGGGGcuugCCGagguagugcaccaccGCGGCCGCGAu -3'
miRNA:   3'- aCGUGgUCCUCa---GGC---------------UGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 194864 0.74 0.477408
Target:  5'- gGUGCCAGGAGUCaCGGCGAucugaUCGCGGu -3'
miRNA:   3'- aCGUGGUCCUCAG-GCUGCU-----GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 194070 0.74 0.477408
Target:  5'- aGCAgCGGcgcGAGUCCGACGACCuGCGGc -3'
miRNA:   3'- aCGUgGUC---CUCAGGCUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 192536 0.7 0.729606
Target:  5'- aGcCGCCAGGGGUCCGcACaGCCcuGCGGGa -3'
miRNA:   3'- aC-GUGGUCCUCAGGC-UGcUGG--UGCUU- -5'
16222 5' -57.5 NC_004065.1 + 182439 0.66 0.912059
Target:  5'- gGCAgCCGGGGGUCCugguGACGuagccucuggGCCugGGu -3'
miRNA:   3'- aCGU-GGUCCUCAGG----CUGC----------UGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 180340 0.68 0.819582
Target:  5'- cGuCAUCAGGAGggacgccugcUCCGGCGgcaccGCCACGGGa -3'
miRNA:   3'- aC-GUGGUCCUC----------AGGCUGC-----UGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 178203 0.66 0.923138
Target:  5'- aUGgAUCGGGAGUCCGccauccgGGCgGCGAAa -3'
miRNA:   3'- -ACgUGGUCCUCAGGCug-----CUGgUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 178128 0.66 0.906186
Target:  5'- aGCGUCAGGAagCCGGCGAUgGCGGu -3'
miRNA:   3'- aCGUGGUCCUcaGGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 173962 0.66 0.906186
Target:  5'- cGcCAUCGGGguGGUCC-ACGACCugGGg -3'
miRNA:   3'- aC-GUGGUCC--UCAGGcUGCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 173198 0.68 0.84924
Target:  5'- gGCACCucguGGAcgagauuggucuccGUCCGACGAucUCACGGc -3'
miRNA:   3'- aCGUGGu---CCU--------------CAGGCUGCU--GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 163292 0.72 0.601989
Target:  5'- cGcCGCCGGG-GUCCGACGG-CACGGg -3'
miRNA:   3'- aC-GUGGUCCuCAGGCUGCUgGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 162428 0.66 0.900092
Target:  5'- cUGCACCAGcAGcUCCGACGGCgA-GAu -3'
miRNA:   3'- -ACGUGGUCcUC-AGGCUGCUGgUgCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.