Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16222 | 5' | -57.5 | NC_004065.1 | + | 161984 | 0.67 | 0.858331 |
Target: 5'- gUGCGCCAGcAG-CUGGCGGCCcacguccACGAAg -3' miRNA: 3'- -ACGUGGUCcUCaGGCUGCUGG-------UGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 152174 | 0.69 | 0.757808 |
Target: 5'- gUGCACCGGGGagcccacgccgcGUCCGGaGACCugGu- -3' miRNA: 3'- -ACGUGGUCCU------------CAGGCUgCUGGugCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 149703 | 0.69 | 0.785072 |
Target: 5'- -aCGCCGGGGGgCCG-CGGCCGCGc- -3' miRNA: 3'- acGUGGUCCUCaGGCuGCUGGUGCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 143119 | 0.66 | 0.906186 |
Target: 5'- cGCGCCgccgagGGcGAGaCCGGCG-CCGCGAc -3' miRNA: 3'- aCGUGG------UC-CUCaGGCUGCuGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 139842 | 0.69 | 0.802616 |
Target: 5'- aGUcCCGGGAGgCgGGCGACgGCGGAg -3' miRNA: 3'- aCGuGGUCCUCaGgCUGCUGgUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 139582 | 0.66 | 0.923138 |
Target: 5'- aGCACuCGGGAGguggCCGcgGCGAUCGCc-- -3' miRNA: 3'- aCGUG-GUCCUCa---GGC--UGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 136997 | 0.66 | 0.912059 |
Target: 5'- gGCGCCAGGAacagCGAgGGCgACGAGa -3' miRNA: 3'- aCGUGGUCCUcag-GCUgCUGgUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 134694 | 0.67 | 0.887254 |
Target: 5'- -cUACCGGGAGUUCGAgGGCCuGCa-- -3' miRNA: 3'- acGUGGUCCUCAGGCUgCUGG-UGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 127211 | 0.7 | 0.710395 |
Target: 5'- gUGguUCGGGAG--CGGCGGCCGCGAGg -3' miRNA: 3'- -ACguGGUCCUCagGCUGCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 123045 | 0.67 | 0.873571 |
Target: 5'- cUGCGCCuuccgcucGGGAGgacCCGcuCGAUCACGAGu -3' miRNA: 3'- -ACGUGG--------UCCUCa--GGCu-GCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 120452 | 0.68 | 0.851538 |
Target: 5'- cGcCGCCAGGAGaCaGGCGGCCACc-- -3' miRNA: 3'- aC-GUGGUCCUCaGgCUGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 120054 | 0.7 | 0.729606 |
Target: 5'- aGCGCCAGGAcgucGUCgGA-GACCGCGc- -3' miRNA: 3'- aCGUGGUCCU----CAGgCUgCUGGUGCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 118669 | 0.74 | 0.514624 |
Target: 5'- aGCGCCGacgaugaaggcGGAGaUCCaGGCGACCACGGu -3' miRNA: 3'- aCGUGGU-----------CCUC-AGG-CUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 118252 | 0.66 | 0.906186 |
Target: 5'- gGaCGCguGGAGcucgCCGGCGGCCuCGAc -3' miRNA: 3'- aC-GUGguCCUCa---GGCUGCUGGuGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 110575 | 0.69 | 0.767011 |
Target: 5'- -cCGCCAGGcgucGGUCuCGGCGACCACc-- -3' miRNA: 3'- acGUGGUCC----UCAG-GCUGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 109864 | 0.66 | 0.89378 |
Target: 5'- gGUGCCGGGcGGUgccaCCGGCGucGCCGCGGc -3' miRNA: 3'- aCGUGGUCC-UCA----GGCUGC--UGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 108939 | 0.72 | 0.611882 |
Target: 5'- cUGCGCCugcGGcAGUacgCCGACGACCugGGg -3' miRNA: 3'- -ACGUGGu--CC-UCA---GGCUGCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 108494 | 0.68 | 0.811175 |
Target: 5'- cUGCAUCGuGGuccucgUCGACGACCGCGAc -3' miRNA: 3'- -ACGUGGU-CCuca---GGCUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 107517 | 0.7 | 0.700692 |
Target: 5'- cGCACgAGGAGgugcgCgCGGCGACCGCc-- -3' miRNA: 3'- aCGUGgUCCUCa----G-GCUGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 106038 | 0.68 | 0.833502 |
Target: 5'- aGCGCCAuGAGgaucgCuaugaucaccaaagCGACGACCACGGAg -3' miRNA: 3'- aCGUGGUcCUCa----G--------------GCUGCUGGUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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