Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16222 | 5' | -57.5 | NC_004065.1 | + | 102558 | 0.7 | 0.729606 |
Target: 5'- gGCGCCGGGgucgGGUCCcGCGGCCAUc-- -3' miRNA: 3'- aCGUGGUCC----UCAGGcUGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 96548 | 0.68 | 0.83108 |
Target: 5'- cUGgACgAGGAGUcgcuggacucguccgCCGACGAgCCGCGAc -3' miRNA: 3'- -ACgUGgUCCUCA---------------GGCUGCU-GGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 90529 | 0.66 | 0.898221 |
Target: 5'- gGUGCgGGGAGUacuucucgucccgcCCGACGGCCcccuCGAAc -3' miRNA: 3'- aCGUGgUCCUCA--------------GGCUGCUGGu---GCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 90380 | 0.69 | 0.802616 |
Target: 5'- cGCGCCGcacagcuuGGAG-CCGGCGuuCACGAu -3' miRNA: 3'- aCGUGGU--------CCUCaGGCUGCugGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 83559 | 0.72 | 0.631703 |
Target: 5'- aGCGCCAgggcacGGAGUagaCGGCGACgGCGGGg -3' miRNA: 3'- aCGUGGU------CCUCAg--GCUGCUGgUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 82605 | 0.68 | 0.851538 |
Target: 5'- aGCACCAGGu---UGACGACCugGu- -3' miRNA: 3'- aCGUGGUCCucagGCUGCUGGugCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 80294 | 0.68 | 0.843813 |
Target: 5'- cGCGCUGGaccgcuauGAGUCCGagggccggcGCGGCCGCGGc -3' miRNA: 3'- aCGUGGUC--------CUCAGGC---------UGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 78037 | 0.66 | 0.900092 |
Target: 5'- gUGCGCCGGGucccugaugAGgCCGGCGggGCgCACGAAc -3' miRNA: 3'- -ACGUGGUCC---------UCaGGCUGC--UG-GUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 76754 | 0.68 | 0.843031 |
Target: 5'- gGCGCCGGcGGccucgucaucGUCCGGCGcaucgccGCCGCGAc -3' miRNA: 3'- aCGUGGUC-CU----------CAGGCUGC-------UGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 72683 | 0.69 | 0.757808 |
Target: 5'- gGCACCuGGAGaaccugCCGAgCGACC-CGGAc -3' miRNA: 3'- aCGUGGuCCUCa-----GGCU-GCUGGuGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 70677 | 0.7 | 0.729606 |
Target: 5'- cGCAUCAGGcuGcCCGAgGGCCugGAc -3' miRNA: 3'- aCGUGGUCCu-CaGGCUgCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 66859 | 0.67 | 0.887254 |
Target: 5'- cGUGCCGGGAaaucgCCGaACGACCugcGCGAGu -3' miRNA: 3'- aCGUGGUCCUca---GGC-UGCUGG---UGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 65348 | 0.66 | 0.923138 |
Target: 5'- aGCugCGGGugggucGGUCgGAuCGACCugGGc -3' miRNA: 3'- aCGugGUCC------UCAGgCU-GCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 62392 | 0.7 | 0.710395 |
Target: 5'- gGCGgCGGGGGU--GGCGGCCGCGGAu -3' miRNA: 3'- aCGUgGUCCUCAggCUGCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 61681 | 0.72 | 0.641618 |
Target: 5'- aGCGCgAGGGGUCCGcagcgcgucACGuCCGCGGc -3' miRNA: 3'- aCGUGgUCCUCAGGC---------UGCuGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 53324 | 0.66 | 0.900092 |
Target: 5'- aGCACCAcGGAcaaaaccaCGGCGAUCAUGAAg -3' miRNA: 3'- aCGUGGU-CCUcag-----GCUGCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 48460 | 0.66 | 0.900092 |
Target: 5'- gGCugCAGGAGg-UGACGgugccguagucGCCGCGAu -3' miRNA: 3'- aCGugGUCCUCagGCUGC-----------UGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 44780 | 0.66 | 0.89378 |
Target: 5'- cGCGcCCGGGAacguuGUCCGACGugUccuccgauACGGAu -3' miRNA: 3'- aCGU-GGUCCU-----CAGGCUGCugG--------UGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 44770 | 0.69 | 0.785072 |
Target: 5'- cGgGCCAGGGucGUCCGA-GGCCugGGc -3' miRNA: 3'- aCgUGGUCCU--CAGGCUgCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 41209 | 0.66 | 0.900092 |
Target: 5'- gGCACCAGGAauacaUCCGAaaCGugCGCa-- -3' miRNA: 3'- aCGUGGUCCUc----AGGCU--GCugGUGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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