miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 36543 0.68 0.851538
Target:  5'- cGCuaaCGGGcauccGUCCGGCGcCCGCGAAg -3'
miRNA:   3'- aCGug-GUCCu----CAGGCUGCuGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 35982 0.68 0.827828
Target:  5'- cGCGCCAuGGAcauGUUCGACGGCgGCa-- -3'
miRNA:   3'- aCGUGGU-CCU---CAGGCUGCUGgUGcuu -5'
16222 5' -57.5 NC_004065.1 + 35685 0.7 0.700692
Target:  5'- cGCgaGCCAGGAGaUCgCGcgucGCGACCugGAAg -3'
miRNA:   3'- aCG--UGGUCCUC-AG-GC----UGCUGGugCUU- -5'
16222 5' -57.5 NC_004065.1 + 34584 0.68 0.811175
Target:  5'- cGgACUcGGAccuGUCCGACGACgGCGAc -3'
miRNA:   3'- aCgUGGuCCU---CAGGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 31981 0.66 0.922605
Target:  5'- cGCAacuCCAuccccuuGGAaccgCCGGCGACCGCGAc -3'
miRNA:   3'- aCGU---GGU-------CCUca--GGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 31049 0.77 0.344016
Target:  5'- aGCGCCAGGAGUCUGuuGACgGCGu- -3'
miRNA:   3'- aCGUGGUCCUCAGGCugCUGgUGCuu -5'
16222 5' -57.5 NC_004065.1 + 28012 0.66 0.89378
Target:  5'- aGCGCCgAGGAGgacgCCaucgcguuGGCGGCCaACGAc -3'
miRNA:   3'- aCGUGG-UCCUCa---GG--------CUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 26939 0.66 0.912059
Target:  5'- gGCucaAGGAccgcUCCGGCGGCCGCGGc -3'
miRNA:   3'- aCGuggUCCUc---AGGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 25757 0.67 0.873571
Target:  5'- aGgACCAGGGuGUCguCGGCGACCuuGAGu -3'
miRNA:   3'- aCgUGGUCCU-CAG--GCUGCUGGugCUU- -5'
16222 5' -57.5 NC_004065.1 + 25478 0.77 0.339564
Target:  5'- aGCACCucccgccgcccgacgAGGcGUCUGGCGACCACGAc -3'
miRNA:   3'- aCGUGG---------------UCCuCAGGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 22505 0.7 0.7485
Target:  5'- cGCgGCgAGGAGgaCCGACGACCGCu-- -3'
miRNA:   3'- aCG-UGgUCCUCa-GGCUGCUGGUGcuu -5'
16222 5' -57.5 NC_004065.1 + 20694 0.68 0.84146
Target:  5'- gGCACCGGGcaguccccAGUagcacacgacggcaCCGACGGCgACGAc -3'
miRNA:   3'- aCGUGGUCC--------UCA--------------GGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 17654 0.73 0.582273
Target:  5'- gGCACC-GGAGUCggaUGACGACCgACGGu -3'
miRNA:   3'- aCGUGGuCCUCAG---GCUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 4364 0.7 0.7485
Target:  5'- cUGCGCguGGAG-CgCGACGGCgGCGGc -3'
miRNA:   3'- -ACGUGguCCUCaG-GCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 1003 0.7 0.700692
Target:  5'- cGCugCGGGAGgCCGA-GugCGCGAu -3'
miRNA:   3'- aCGugGUCCUCaGGCUgCugGUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.