miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16222 5' -57.5 NC_004065.1 + 20694 0.68 0.84146
Target:  5'- gGCACCGGGcaguccccAGUagcacacgacggcaCCGACGGCgACGAc -3'
miRNA:   3'- aCGUGGUCC--------UCA--------------GGCUGCUGgUGCUu -5'
16222 5' -57.5 NC_004065.1 + 72683 0.69 0.757808
Target:  5'- gGCACCuGGAGaaccugCCGAgCGACC-CGGAc -3'
miRNA:   3'- aCGUGGuCCUCa-----GGCU-GCUGGuGCUU- -5'
16222 5' -57.5 NC_004065.1 + 195226 0.69 0.770661
Target:  5'- aGCACgAGGGGcuugCCGagguagugcaccaccGCGGCCGCGAu -3'
miRNA:   3'- aCGUGgUCCUCa---GGC---------------UGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 149703 0.69 0.785072
Target:  5'- -aCGCCGGGGGgCCG-CGGCCGCGc- -3'
miRNA:   3'- acGUGGUCCUCaGGCuGCUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 213400 0.69 0.793912
Target:  5'- cUGCACUAGGGGUugccgCCGAagaGAUCGCGu- -3'
miRNA:   3'- -ACGUGGUCCUCA-----GGCUg--CUGGUGCuu -5'
16222 5' -57.5 NC_004065.1 + 90380 0.69 0.802616
Target:  5'- cGCGCCGcacagcuuGGAG-CCGGCGuuCACGAu -3'
miRNA:   3'- aCGUGGU--------CCUCaGGCUGCugGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 108494 0.68 0.811175
Target:  5'- cUGCAUCGuGGuccucgUCGACGACCGCGAc -3'
miRNA:   3'- -ACGUGGU-CCuca---GGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 96548 0.68 0.83108
Target:  5'- cUGgACgAGGAGUcgcuggacucguccgCCGACGAgCCGCGAc -3'
miRNA:   3'- -ACgUGgUCCUCA---------------GGCUGCU-GGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 106038 0.68 0.833502
Target:  5'- aGCGCCAuGAGgaucgCuaugaucaccaaagCGACGACCACGGAg -3'
miRNA:   3'- aCGUGGUcCUCa----G--------------GCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 152174 0.69 0.757808
Target:  5'- gUGCACCGGGGagcccacgccgcGUCCGGaGACCugGu- -3'
miRNA:   3'- -ACGUGGUCCU------------CAGGCUgCUGGugCuu -5'
16222 5' -57.5 NC_004065.1 + 70677 0.7 0.729606
Target:  5'- cGCAUCAGGcuGcCCGAgGGCCugGAc -3'
miRNA:   3'- aCGUGGUCCu-CaGGCUgCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 127211 0.7 0.710395
Target:  5'- gUGguUCGGGAG--CGGCGGCCGCGAGg -3'
miRNA:   3'- -ACguGGUCCUCagGCUGCUGGUGCUU- -5'
16222 5' -57.5 NC_004065.1 + 25478 0.77 0.339564
Target:  5'- aGCACCucccgccgcccgacgAGGcGUCUGGCGACCACGAc -3'
miRNA:   3'- aCGUGG---------------UCCuCAGGCUGCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 31049 0.77 0.344016
Target:  5'- aGCGCCAGGAGUCUGuuGACgGCGu- -3'
miRNA:   3'- aCGUGGUCCUCAGGCugCUGgUGCuu -5'
16222 5' -57.5 NC_004065.1 + 17654 0.73 0.582273
Target:  5'- gGCACC-GGAGUCggaUGACGACCgACGGu -3'
miRNA:   3'- aCGUGGuCCUCAG---GCUGCUGG-UGCUu -5'
16222 5' -57.5 NC_004065.1 + 200408 0.72 0.592117
Target:  5'- cUGCGCCAGGAagauGUCCGcgaaguccugcAgGACCGCGGu -3'
miRNA:   3'- -ACGUGGUCCU----CAGGC-----------UgCUGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 163292 0.72 0.601989
Target:  5'- cGcCGCCGGG-GUCCGACGG-CACGGg -3'
miRNA:   3'- aC-GUGGUCCuCAGGCUGCUgGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 108939 0.72 0.611882
Target:  5'- cUGCGCCugcGGcAGUacgCCGACGACCugGGg -3'
miRNA:   3'- -ACGUGGu--CC-UCA---GGCUGCUGGugCUu -5'
16222 5' -57.5 NC_004065.1 + 61681 0.72 0.641618
Target:  5'- aGCGCgAGGGGUCCGcagcgcgucACGuCCGCGGc -3'
miRNA:   3'- aCGUGgUCCUCAGGC---------UGCuGGUGCUu -5'
16222 5' -57.5 NC_004065.1 + 62392 0.7 0.710395
Target:  5'- gGCGgCGGGGGU--GGCGGCCGCGGAu -3'
miRNA:   3'- aCGUgGUCCUCAggCUGCUGGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.