Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16222 | 5' | -57.5 | NC_004065.1 | + | 108939 | 0.72 | 0.611882 |
Target: 5'- cUGCGCCugcGGcAGUacgCCGACGACCugGGg -3' miRNA: 3'- -ACGUGGu--CC-UCA---GGCUGCUGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 163292 | 0.72 | 0.601989 |
Target: 5'- cGcCGCCGGG-GUCCGACGG-CACGGg -3' miRNA: 3'- aC-GUGGUCCuCAGGCUGCUgGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 200408 | 0.72 | 0.592117 |
Target: 5'- cUGCGCCAGGAagauGUCCGcgaaguccugcAgGACCGCGGu -3' miRNA: 3'- -ACGUGGUCCU----CAGGC-----------UgCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 123045 | 0.67 | 0.873571 |
Target: 5'- cUGCGCCuuccgcucGGGAGgacCCGcuCGAUCACGAGu -3' miRNA: 3'- -ACGUGG--------UCCUCa--GGCu-GCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 31049 | 0.77 | 0.344016 |
Target: 5'- aGCGCCAGGAGUCUGuuGACgGCGu- -3' miRNA: 3'- aCGUGGUCCUCAGGCugCUGgUGCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 25757 | 0.67 | 0.873571 |
Target: 5'- aGgACCAGGGuGUCguCGGCGACCuuGAGu -3' miRNA: 3'- aCgUGGUCCU-CAG--GCUGCUGGugCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 72683 | 0.69 | 0.757808 |
Target: 5'- gGCACCuGGAGaaccugCCGAgCGACC-CGGAc -3' miRNA: 3'- aCGUGGuCCUCa-----GGCU-GCUGGuGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 195226 | 0.69 | 0.770661 |
Target: 5'- aGCACgAGGGGcuugCCGagguagugcaccaccGCGGCCGCGAu -3' miRNA: 3'- aCGUGgUCCUCa---GGC---------------UGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 20694 | 0.68 | 0.84146 |
Target: 5'- gGCACCGGGcaguccccAGUagcacacgacggcaCCGACGGCgACGAc -3' miRNA: 3'- aCGUGGUCC--------UCA--------------GGCUGCUGgUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 106038 | 0.68 | 0.833502 |
Target: 5'- aGCGCCAuGAGgaucgCuaugaucaccaaagCGACGACCACGGAg -3' miRNA: 3'- aCGUGGUcCUCa----G--------------GCUGCUGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 96548 | 0.68 | 0.83108 |
Target: 5'- cUGgACgAGGAGUcgcuggacucguccgCCGACGAgCCGCGAc -3' miRNA: 3'- -ACgUGgUCCUCA---------------GGCUGCU-GGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 136997 | 0.66 | 0.912059 |
Target: 5'- gGCGCCAGGAacagCGAgGGCgACGAGa -3' miRNA: 3'- aCGUGGUCCUcag-GCUgCUGgUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 182439 | 0.66 | 0.912059 |
Target: 5'- gGCAgCCGGGGGUCCugguGACGuagccucuggGCCugGGu -3' miRNA: 3'- aCGU-GGUCCUCAGG----CUGC----------UGGugCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 26939 | 0.66 | 0.912059 |
Target: 5'- gGCucaAGGAccgcUCCGGCGGCCGCGGc -3' miRNA: 3'- aCGuggUCCUc---AGGCUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 31981 | 0.66 | 0.922605 |
Target: 5'- cGCAacuCCAuccccuuGGAaccgCCGGCGACCGCGAc -3' miRNA: 3'- aCGU---GGU-------CCUca--GGCUGCUGGUGCUu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 139582 | 0.66 | 0.923138 |
Target: 5'- aGCACuCGGGAGguggCCGcgGCGAUCGCc-- -3' miRNA: 3'- aCGUG-GUCCUCa---GGC--UGCUGGUGcuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 224702 | 0.68 | 0.843813 |
Target: 5'- gGCugCAGGGGUgUCGAC--CCACGGAu -3' miRNA: 3'- aCGugGUCCUCA-GGCUGcuGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 229565 | 0.68 | 0.843813 |
Target: 5'- cGC-CCAGG-GUCCccgGACGuuacGCCGCGAGg -3' miRNA: 3'- aCGuGGUCCuCAGG---CUGC----UGGUGCUU- -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 82605 | 0.68 | 0.851538 |
Target: 5'- aGCACCAGGu---UGACGACCugGu- -3' miRNA: 3'- aCGUGGUCCucagGCUGCUGGugCuu -5' |
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16222 | 5' | -57.5 | NC_004065.1 | + | 149703 | 0.69 | 0.785072 |
Target: 5'- -aCGCCGGGGGgCCG-CGGCCGCGc- -3' miRNA: 3'- acGUGGUCCUCaGGCuGCUGGUGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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