miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 122054 0.66 0.987017
Target:  5'- uCCGCUGCCgGUCUcaacCCUUGuAGAugcacaggGCCGAu -3'
miRNA:   3'- -GGCGAUGG-UAGA----GGAGCcUCU--------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 106045 0.66 0.987017
Target:  5'- aCGCcgAUCGUgaCCaaGGAGGACCGGg -3'
miRNA:   3'- gGCGa-UGGUAgaGGagCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 212270 0.66 0.987017
Target:  5'- gCCGCUGCaCA-CUCCUCcGAGGAa-GAa -3'
miRNA:   3'- -GGCGAUG-GUaGAGGAGcCUCUUggCU- -5'
16223 3' -54.4 NC_004065.1 + 146274 0.66 0.987017
Target:  5'- uCCGCgcgaguuccugGCCuucGUCUUCUCGGAcGACCa- -3'
miRNA:   3'- -GGCGa----------UGG---UAGAGGAGCCUcUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 24429 0.66 0.987017
Target:  5'- gCUGCUGCCGaCguagaCCUCGGGaGGCUGGc -3'
miRNA:   3'- -GGCGAUGGUaGa----GGAGCCUcUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 162159 0.66 0.985424
Target:  5'- -aGgU-CCGUCagcCCUCGGAGGAUCGGa -3'
miRNA:   3'- ggCgAuGGUAGa--GGAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 205493 0.66 0.984746
Target:  5'- uCCGCUGCCGUCgucgcugccgccgCCaUCuuGGGGCCGGc -3'
miRNA:   3'- -GGCGAUGGUAGa------------GG-AGccUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 40117 0.66 0.983685
Target:  5'- gCCGCUauauugguggugGCgAUCUCCgcgcUCGuGAGAcgcuGCCGAc -3'
miRNA:   3'- -GGCGA------------UGgUAGAGG----AGC-CUCU----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 117906 0.66 0.983685
Target:  5'- cCCGCUGCagaaagagggaUAUCgCCUCGG-GAuCCGGu -3'
miRNA:   3'- -GGCGAUG-----------GUAGaGGAGCCuCUuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 140353 0.66 0.981794
Target:  5'- uCUGCUGCgagcuCGUCUCCaUUGGGGAuuCCGu -3'
miRNA:   3'- -GGCGAUG-----GUAGAGG-AGCCUCUu-GGCu -5'
16223 3' -54.4 NC_004065.1 + 31979 0.66 0.981794
Target:  5'- uCCGCaacuCCAUCcCCUUGGAaccGCCGGc -3'
miRNA:   3'- -GGCGau--GGUAGaGGAGCCUcu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 133766 0.66 0.981794
Target:  5'- cCCGCcguCCAUCcgcaUCCUCGaccacGAGCCGGg -3'
miRNA:   3'- -GGCGau-GGUAG----AGGAGCcu---CUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 97146 0.66 0.979742
Target:  5'- aCUGCUGCugguCAUCcgaCUCGGAGGGgCGGg -3'
miRNA:   3'- -GGCGAUG----GUAGag-GAGCCUCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 107145 0.66 0.979742
Target:  5'- aCCGCcACCAUCUgCUgGGcagcucgcagguGGGGCUGGa -3'
miRNA:   3'- -GGCGaUGGUAGAgGAgCC------------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 5561 0.67 0.977524
Target:  5'- -aGCUACCAgCUCC-CGGuuGAGCUGc -3'
miRNA:   3'- ggCGAUGGUaGAGGaGCCu-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 210994 0.67 0.977524
Target:  5'- aCCGCcGCCGUCgUCCaacccuUCGGAGucgUCGAu -3'
miRNA:   3'- -GGCGaUGGUAG-AGG------AGCCUCuu-GGCU- -5'
16223 3' -54.4 NC_004065.1 + 19838 0.67 0.977524
Target:  5'- aCGCUccucCCGUCUCCgCGGAGuacuCCa- -3'
miRNA:   3'- gGCGAu---GGUAGAGGaGCCUCuu--GGcu -5'
16223 3' -54.4 NC_004065.1 + 116409 0.67 0.977524
Target:  5'- uCCGCUuCCAgCcCCUUGGcGGGACCGc -3'
miRNA:   3'- -GGCGAuGGUaGaGGAGCC-UCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 57950 0.67 0.977524
Target:  5'- cCCGCUcgaACCGcggCggCCaCGGAGGACCGc -3'
miRNA:   3'- -GGCGA---UGGUa--Ga-GGaGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 45686 0.67 0.975132
Target:  5'- aCCGCgguaGCCAUCUUgUau-AGAACCGAa -3'
miRNA:   3'- -GGCGa---UGGUAGAGgAgccUCUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.