miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 149145 0.67 0.975132
Target:  5'- -aGUcGCCugAUCUUCgUCGGGGGGCCGGa -3'
miRNA:   3'- ggCGaUGG--UAGAGG-AGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 89464 0.67 0.966847
Target:  5'- aCGCUGCUcugCggcgUCUUGGAGAuggGCCGAu -3'
miRNA:   3'- gGCGAUGGua-Ga---GGAGCCUCU---UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 57950 0.67 0.977524
Target:  5'- cCCGCUcgaACCGcggCggCCaCGGAGGACCGc -3'
miRNA:   3'- -GGCGA---UGGUa--Ga-GGaGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 19838 0.67 0.977524
Target:  5'- aCGCUccucCCGUCUCCgCGGAGuacuCCa- -3'
miRNA:   3'- gGCGAu---GGUAGAGGaGCCUCuu--GGcu -5'
16223 3' -54.4 NC_004065.1 + 15124 0.67 0.975132
Target:  5'- aUCG-UACCAUaaCCUaCGGAGAACCa- -3'
miRNA:   3'- -GGCgAUGGUAgaGGA-GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 179018 0.67 0.972559
Target:  5'- gCCGCgg-CGUCUCCucccaucgcUCGGAGGGCUa- -3'
miRNA:   3'- -GGCGaugGUAGAGG---------AGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 5561 0.67 0.977524
Target:  5'- -aGCUACCAgCUCC-CGGuuGAGCUGc -3'
miRNA:   3'- ggCGAUGGUaGAGGaGCCu-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 43474 0.68 0.953007
Target:  5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3'
miRNA:   3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 150504 0.68 0.960343
Target:  5'- cCCGCUcgGCCGUgCguaCCUCGGcgaugGGAACCa- -3'
miRNA:   3'- -GGCGA--UGGUA-Ga--GGAGCC-----UCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 88036 0.68 0.953394
Target:  5'- gCCGCgguaucgucgucaucGCCGUCgCCUCcggagGGAGGACCGu -3'
miRNA:   3'- -GGCGa--------------UGGUAGaGGAG-----CCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 108396 0.68 0.960343
Target:  5'- gCGCUcaacGCCA--UCCUCGGGGGcauccugcccuACCGGg -3'
miRNA:   3'- gGCGA----UGGUagAGGAGCCUCU-----------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 193851 0.68 0.960343
Target:  5'- cCUGCUGCCGUCgcuucgUCCgCGGcGAcucccGCCGAu -3'
miRNA:   3'- -GGCGAUGGUAG------AGGaGCCuCU-----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 2102 0.68 0.956781
Target:  5'- aCCGaCUGCcCGUCUCCuUCGGAGua--GAa -3'
miRNA:   3'- -GGC-GAUG-GUAGAGG-AGCCUCuuggCU- -5'
16223 3' -54.4 NC_004065.1 + 40610 0.68 0.96238
Target:  5'- aCUGCUACCuUCccgagaaaaucaaaUCCUCGGcGAcggugacGCCGAa -3'
miRNA:   3'- -GGCGAUGGuAG--------------AGGAGCCuCU-------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 76609 0.68 0.953007
Target:  5'- aCGCUcuuACCGUCUaucaCgUCGGAGAACUu- -3'
miRNA:   3'- gGCGA---UGGUAGA----GgAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 94774 0.68 0.953007
Target:  5'- gCCGgUccuCCAUCUCCUCGGAcaucuugcGAuuaucCCGAg -3'
miRNA:   3'- -GGCgAu--GGUAGAGGAGCCU--------CUu----GGCU- -5'
16223 3' -54.4 NC_004065.1 + 185467 0.68 0.956781
Target:  5'- gCCGCUAgaGgacUUCCUCGGGGAgaugaggacACCGGg -3'
miRNA:   3'- -GGCGAUggUa--GAGGAGCCUCU---------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 93697 0.68 0.956781
Target:  5'- cCCgGCUACC--CUCCUCGGcucACCGGa -3'
miRNA:   3'- -GG-CGAUGGuaGAGGAGCCucuUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 130671 0.68 0.949017
Target:  5'- gUCGCUGCCAacgCUCgUCGGgcgaGGAGgCGGa -3'
miRNA:   3'- -GGCGAUGGUa--GAGgAGCC----UCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 39271 0.68 0.948606
Target:  5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3'
miRNA:   3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.