miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 25395 0.68 0.956781
Target:  5'- gCCGCUGCCAaa--CUCGGcGGuCCGAa -3'
miRNA:   3'- -GGCGAUGGUagagGAGCCuCUuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 39271 0.68 0.948606
Target:  5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3'
miRNA:   3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 40610 0.68 0.96238
Target:  5'- aCUGCUACCuUCccgagaaaaucaaaUCCUCGGcGAcggugacGCCGAa -3'
miRNA:   3'- -GGCGAUGGuAG--------------AGGAGCCuCU-------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 150504 0.68 0.960343
Target:  5'- cCCGCUcgGCCGUgCguaCCUCGGcgaugGGAACCa- -3'
miRNA:   3'- -GGCGA--UGGUA-Ga--GGAGCC-----UCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 108396 0.68 0.960343
Target:  5'- gCGCUcaacGCCA--UCCUCGGGGGcauccugcccuACCGGg -3'
miRNA:   3'- gGCGA----UGGUagAGGAGCCUCU-----------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 185467 0.68 0.956781
Target:  5'- gCCGCUAgaGgacUUCCUCGGGGAgaugaggacACCGGg -3'
miRNA:   3'- -GGCGAUggUa--GAGGAGCCUCU---------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 93697 0.68 0.956781
Target:  5'- cCCgGCUACC--CUCCUCGGcucACCGGa -3'
miRNA:   3'- -GG-CGAUGGuaGAGGAGCCucuUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 52046 0.68 0.956781
Target:  5'- cUCGUUGgCAgUCUCCUCGGcGAAgCGGc -3'
miRNA:   3'- -GGCGAUgGU-AGAGGAGCCuCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 130671 0.68 0.949017
Target:  5'- gUCGCUGCCAacgCUCgUCGGgcgaGGAGgCGGa -3'
miRNA:   3'- -GGCGAUGGUa--GAGgAGCC----UCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 43474 0.68 0.953007
Target:  5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3'
miRNA:   3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 17980 0.67 0.975132
Target:  5'- gCCGCgcgACC-UCUugggUgUCGGGGAGCUGGa -3'
miRNA:   3'- -GGCGa--UGGuAGA----GgAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 75697 0.67 0.966847
Target:  5'- gCCGCgcccCCAcCUCCUgcguaucuucgCGuGAGAACCGGg -3'
miRNA:   3'- -GGCGau--GGUaGAGGA-----------GC-CUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 89464 0.67 0.966847
Target:  5'- aCGCUGCUcugCggcgUCUUGGAGAuggGCCGAu -3'
miRNA:   3'- gGCGAUGGua-Ga---GGAGCCUCU---UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 149145 0.67 0.975132
Target:  5'- -aGUcGCCugAUCUUCgUCGGGGGGCCGGa -3'
miRNA:   3'- ggCGaUGG--UAGAGG-AGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 179018 0.67 0.972559
Target:  5'- gCCGCgg-CGUCUCCucccaucgcUCGGAGGGCUa- -3'
miRNA:   3'- -GGCGaugGUAGAGG---------AGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 15124 0.67 0.975132
Target:  5'- aUCG-UACCAUaaCCUaCGGAGAACCa- -3'
miRNA:   3'- -GGCgAUGGUAgaGGA-GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 45686 0.67 0.975132
Target:  5'- aCCGCgguaGCCAUCUUgUau-AGAACCGAa -3'
miRNA:   3'- -GGCGa---UGGUAGAGgAgccUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 5561 0.67 0.977524
Target:  5'- -aGCUACCAgCUCC-CGGuuGAGCUGc -3'
miRNA:   3'- ggCGAUGGUaGAGGaGCCu-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 116409 0.67 0.977524
Target:  5'- uCCGCUuCCAgCcCCUUGGcGGGACCGc -3'
miRNA:   3'- -GGCGAuGGUaGaGGAGCC-UCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 115831 0.67 0.966847
Target:  5'- aCGaCUgaGCCAUCUCCUCGc--GGCCGGc -3'
miRNA:   3'- gGC-GA--UGGUAGAGGAGCcucUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.