miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 211700 1.11 0.005486
Target:  5'- gCCGCUACCAUCUCCUCGGAGAACCGAa -3'
miRNA:   3'- -GGCGAUGGUAGAGGAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 12421 0.79 0.444022
Target:  5'- -aGCUACCGUCUCCUCGaauggcaGAGAGgCGAu -3'
miRNA:   3'- ggCGAUGGUAGAGGAGC-------CUCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 6659 0.78 0.527915
Target:  5'- -aGCUACCGUCUCCcuggcaggaugCGGGGAACCcGAg -3'
miRNA:   3'- ggCGAUGGUAGAGGa----------GCCUCUUGG-CU- -5'
16223 3' -54.4 NC_004065.1 + 36266 0.76 0.625949
Target:  5'- gUCGCcAUCAUCUCUcggUCGGcAGAGCCGAg -3'
miRNA:   3'- -GGCGaUGGUAGAGG---AGCC-UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 211098 0.76 0.625949
Target:  5'- gCUGCUgcccGCCGUCUcgCCUCGGuuuaugAGAACCGAg -3'
miRNA:   3'- -GGCGA----UGGUAGA--GGAGCC------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 194462 0.74 0.73382
Target:  5'- uCCGCcugugGCCGcCUUCUCGGAGAugguuauccaACCGAc -3'
miRNA:   3'- -GGCGa----UGGUaGAGGAGCCUCU----------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 113712 0.74 0.746118
Target:  5'- gCCGCUGCCGcCgccgacgccgacaCCUCGGAGAacuccggcgaggagGCCGAg -3'
miRNA:   3'- -GGCGAUGGUaGa------------GGAGCCUCU--------------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 210122 0.73 0.751741
Target:  5'- aCCGCUACCGUCuucgauUCCUCGGcggcgacGGggUgGAu -3'
miRNA:   3'- -GGCGAUGGUAG------AGGAGCC-------UCuuGgCU- -5'
16223 3' -54.4 NC_004065.1 + 181464 0.73 0.761956
Target:  5'- cCCGCUuUCAUCUCCaucgucgCGGAGAAUCa- -3'
miRNA:   3'- -GGCGAuGGUAGAGGa------GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 88206 0.72 0.831617
Target:  5'- aCCGUccuCCGUCUCCgacgCGGcuaacaGGAGCCGGa -3'
miRNA:   3'- -GGCGau-GGUAGAGGa---GCC------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 122480 0.72 0.831617
Target:  5'- cCCGCgACCA-CaCCUCGGAGAACaCGu -3'
miRNA:   3'- -GGCGaUGGUaGaGGAGCCUCUUG-GCu -5'
16223 3' -54.4 NC_004065.1 + 159925 0.71 0.854368
Target:  5'- gCCGCUGCCGgugcugcUCgucgCCUCGGGGu-CCGc -3'
miRNA:   3'- -GGCGAUGGU-------AGa---GGAGCCUCuuGGCu -5'
16223 3' -54.4 NC_004065.1 + 178424 0.71 0.862589
Target:  5'- aCCGCUcAUgAUCaUCUUCGGGGucGCCGAa -3'
miRNA:   3'- -GGCGA-UGgUAG-AGGAGCCUCu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 35198 0.71 0.862589
Target:  5'- aCCGacgACgGUCaUCUCGGAGGACCGc -3'
miRNA:   3'- -GGCga-UGgUAGaGGAGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 163624 0.71 0.862589
Target:  5'- aUGCUGCgCGUCUCCUCGGucagcGAGCg-- -3'
miRNA:   3'- gGCGAUG-GUAGAGGAGCCu----CUUGgcu -5'
16223 3' -54.4 NC_004065.1 + 32511 0.71 0.869857
Target:  5'- aCCGCgcgcgGCCggGUC-CCUCGGAGAccuaGCCa- -3'
miRNA:   3'- -GGCGa----UGG--UAGaGGAGCCUCU----UGGcu -5'
16223 3' -54.4 NC_004065.1 + 124792 0.71 0.869857
Target:  5'- gCGCcACCAUCUCCUCGuccGAcguccGCCGGg -3'
miRNA:   3'- gGCGaUGGUAGAGGAGCcu-CU-----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 186190 0.71 0.872708
Target:  5'- uCCGCUcuguccggccagcugACCAagUUCUUGGAGGACCa- -3'
miRNA:   3'- -GGCGA---------------UGGUagAGGAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 170469 0.71 0.876923
Target:  5'- cCCGUcGCCAUCggCUUCGGGGggUCu- -3'
miRNA:   3'- -GGCGaUGGUAGa-GGAGCCUCuuGGcu -5'
16223 3' -54.4 NC_004065.1 + 226428 0.71 0.876923
Target:  5'- -gGCgGCCGUCUCCa-GGAGAguccucGCCGAu -3'
miRNA:   3'- ggCGaUGGUAGAGGagCCUCU------UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.