miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 28713 0.7 0.888462
Target:  5'- cCCGCcACCAucauccUCUCCUCcucccccggccgccGGAGGGCCa- -3'
miRNA:   3'- -GGCGaUGGU------AGAGGAG--------------CCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 102554 0.7 0.890434
Target:  5'- gCCGCgcccgACCAcCUCCcCGGGGAgAUCGAc -3'
miRNA:   3'- -GGCGa----UGGUaGAGGaGCCUCU-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 107374 0.7 0.890434
Target:  5'- gCCGC--CCGUCUUCUCGgGAGAGgUGAc -3'
miRNA:   3'- -GGCGauGGUAGAGGAGC-CUCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 7843 0.7 0.896871
Target:  5'- gCGCaACCAUCagCCaUGGAGGGCCGc -3'
miRNA:   3'- gGCGaUGGUAGa-GGaGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 161495 0.7 0.896871
Target:  5'- uCCGCcGCCGcCUCCUCGGccu-CCGGg -3'
miRNA:   3'- -GGCGaUGGUaGAGGAGCCucuuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 120799 0.7 0.909089
Target:  5'- aCCGCcGCCGUCUCCcgUCGccGAGcaggaagaGGCCGAg -3'
miRNA:   3'- -GGCGaUGGUAGAGG--AGC--CUC--------UUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 92051 0.7 0.914298
Target:  5'- gCGCUcgaGgCAUCUCacgcgcgCUCGGAGGGCCGc -3'
miRNA:   3'- gGCGA---UgGUAGAG-------GAGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 101284 0.7 0.914866
Target:  5'- gCCGCUGCCGacggCUgCCUCGGcGGccaGCCGc -3'
miRNA:   3'- -GGCGAUGGUa---GA-GGAGCCuCU---UGGCu -5'
16223 3' -54.4 NC_004065.1 + 211453 0.7 0.914866
Target:  5'- gCCcCU-CCG-CUCCUCGGAGGagucGCCGGa -3'
miRNA:   3'- -GGcGAuGGUaGAGGAGCCUCU----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 68514 0.69 0.920419
Target:  5'- gCgGCggACgCAUCUCC-CGGAG-GCCGAg -3'
miRNA:   3'- -GgCGa-UG-GUAGAGGaGCCUCuUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 32840 0.69 0.930849
Target:  5'- aCCGCcACCAgUCgaaCCgCGGGGAGCUGGc -3'
miRNA:   3'- -GGCGaUGGU-AGa--GGaGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 176541 0.69 0.935726
Target:  5'- -gGUcACCAUCUUCcCGGAGAGCuCGGc -3'
miRNA:   3'- ggCGaUGGUAGAGGaGCCUCUUG-GCU- -5'
16223 3' -54.4 NC_004065.1 + 120206 0.69 0.935726
Target:  5'- gCC-CUGCCgAUCUUCUUGGGcGGACCGc -3'
miRNA:   3'- -GGcGAUGG-UAGAGGAGCCU-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 32281 0.69 0.940379
Target:  5'- cCCGCUGuCCgcguccucgGUCUCCUCGucGGAGcCCGAc -3'
miRNA:   3'- -GGCGAU-GG---------UAGAGGAGCc-UCUU-GGCU- -5'
16223 3' -54.4 NC_004065.1 + 39271 0.68 0.948606
Target:  5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3'
miRNA:   3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 130671 0.68 0.949017
Target:  5'- gUCGCUGCCAacgCUCgUCGGgcgaGGAGgCGGa -3'
miRNA:   3'- -GGCGAUGGUa--GAGgAGCC----UCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 43474 0.68 0.953007
Target:  5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3'
miRNA:   3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 94774 0.68 0.953007
Target:  5'- gCCGgUccuCCAUCUCCUCGGAcaucuugcGAuuaucCCGAg -3'
miRNA:   3'- -GGCgAu--GGUAGAGGAGCCU--------CUu----GGCU- -5'
16223 3' -54.4 NC_004065.1 + 76609 0.68 0.953007
Target:  5'- aCGCUcuuACCGUCUaucaCgUCGGAGAACUu- -3'
miRNA:   3'- gGCGA---UGGUAGA----GgAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 88036 0.68 0.953394
Target:  5'- gCCGCgguaucgucgucaucGCCGUCgCCUCcggagGGAGGACCGu -3'
miRNA:   3'- -GGCGa--------------UGGUAGaGGAG-----CCUCUUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.