Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 45686 | 0.67 | 0.975132 |
Target: 5'- aCCGCgguaGCCAUCUUgUau-AGAACCGAa -3' miRNA: 3'- -GGCGa---UGGUAGAGgAgccUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 149145 | 0.67 | 0.975132 |
Target: 5'- -aGUcGCCugAUCUUCgUCGGGGGGCCGGa -3' miRNA: 3'- ggCGaUGG--UAGAGG-AGCCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 17980 | 0.67 | 0.975132 |
Target: 5'- gCCGCgcgACC-UCUugggUgUCGGGGAGCUGGa -3' miRNA: 3'- -GGCGa--UGGuAGA----GgAGCCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 179018 | 0.67 | 0.972559 |
Target: 5'- gCCGCgg-CGUCUCCucccaucgcUCGGAGGGCUa- -3' miRNA: 3'- -GGCGaugGUAGAGG---------AGCCUCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 89464 | 0.67 | 0.966847 |
Target: 5'- aCGCUGCUcugCggcgUCUUGGAGAuggGCCGAu -3' miRNA: 3'- gGCGAUGGua-Ga---GGAGCCUCU---UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 75697 | 0.67 | 0.966847 |
Target: 5'- gCCGCgcccCCAcCUCCUgcguaucuucgCGuGAGAACCGGg -3' miRNA: 3'- -GGCGau--GGUaGAGGA-----------GC-CUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 115831 | 0.67 | 0.966847 |
Target: 5'- aCGaCUgaGCCAUCUCCUCGc--GGCCGGc -3' miRNA: 3'- gGC-GA--UGGUAGAGGAGCcucUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 40610 | 0.68 | 0.96238 |
Target: 5'- aCUGCUACCuUCccgagaaaaucaaaUCCUCGGcGAcggugacGCCGAa -3' miRNA: 3'- -GGCGAUGGuAG--------------AGGAGCCuCU-------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 150504 | 0.68 | 0.960343 |
Target: 5'- cCCGCUcgGCCGUgCguaCCUCGGcgaugGGAACCa- -3' miRNA: 3'- -GGCGA--UGGUA-Ga--GGAGCC-----UCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 108396 | 0.68 | 0.960343 |
Target: 5'- gCGCUcaacGCCA--UCCUCGGGGGcauccugcccuACCGGg -3' miRNA: 3'- gGCGA----UGGUagAGGAGCCUCU-----------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 193851 | 0.68 | 0.960343 |
Target: 5'- cCUGCUGCCGUCgcuucgUCCgCGGcGAcucccGCCGAu -3' miRNA: 3'- -GGCGAUGGUAG------AGGaGCCuCU-----UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 25395 | 0.68 | 0.956781 |
Target: 5'- gCCGCUGCCAaa--CUCGGcGGuCCGAa -3' miRNA: 3'- -GGCGAUGGUagagGAGCCuCUuGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 55665 | 0.68 | 0.956781 |
Target: 5'- aCCaCUACCAccaUCUCCUCcGGcGGACCu- -3' miRNA: 3'- -GGcGAUGGU---AGAGGAG-CCuCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 2102 | 0.68 | 0.956781 |
Target: 5'- aCCGaCUGCcCGUCUCCuUCGGAGua--GAa -3' miRNA: 3'- -GGC-GAUG-GUAGAGG-AGCCUCuuggCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 93697 | 0.68 | 0.956781 |
Target: 5'- cCCgGCUACC--CUCCUCGGcucACCGGa -3' miRNA: 3'- -GG-CGAUGGuaGAGGAGCCucuUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 185467 | 0.68 | 0.956781 |
Target: 5'- gCCGCUAgaGgacUUCCUCGGGGAgaugaggacACCGGg -3' miRNA: 3'- -GGCGAUggUa--GAGGAGCCUCU---------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 52046 | 0.68 | 0.956781 |
Target: 5'- cUCGUUGgCAgUCUCCUCGGcGAAgCGGc -3' miRNA: 3'- -GGCGAUgGU-AGAGGAGCCuCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 88036 | 0.68 | 0.953394 |
Target: 5'- gCCGCgguaucgucgucaucGCCGUCgCCUCcggagGGAGGACCGu -3' miRNA: 3'- -GGCGa--------------UGGUAGaGGAG-----CCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 94774 | 0.68 | 0.953007 |
Target: 5'- gCCGgUccuCCAUCUCCUCGGAcaucuugcGAuuaucCCGAg -3' miRNA: 3'- -GGCgAu--GGUAGAGGAGCCU--------CUu----GGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 43474 | 0.68 | 0.953007 |
Target: 5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3' miRNA: 3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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