Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 43474 | 0.68 | 0.953007 |
Target: 5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3' miRNA: 3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 130671 | 0.68 | 0.949017 |
Target: 5'- gUCGCUGCCAacgCUCgUCGGgcgaGGAGgCGGa -3' miRNA: 3'- -GGCGAUGGUa--GAGgAGCC----UCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 39271 | 0.68 | 0.948606 |
Target: 5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3' miRNA: 3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 32281 | 0.69 | 0.940379 |
Target: 5'- cCCGCUGuCCgcguccucgGUCUCCUCGucGGAGcCCGAc -3' miRNA: 3'- -GGCGAU-GG---------UAGAGGAGCc-UCUU-GGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 120206 | 0.69 | 0.935726 |
Target: 5'- gCC-CUGCCgAUCUUCUUGGGcGGACCGc -3' miRNA: 3'- -GGcGAUGG-UAGAGGAGCCU-CUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 176541 | 0.69 | 0.935726 |
Target: 5'- -gGUcACCAUCUUCcCGGAGAGCuCGGc -3' miRNA: 3'- ggCGaUGGUAGAGGaGCCUCUUG-GCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 32840 | 0.69 | 0.930849 |
Target: 5'- aCCGCcACCAgUCgaaCCgCGGGGAGCUGGc -3' miRNA: 3'- -GGCGaUGGU-AGa--GGaGCCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 68514 | 0.69 | 0.920419 |
Target: 5'- gCgGCggACgCAUCUCC-CGGAG-GCCGAg -3' miRNA: 3'- -GgCGa-UG-GUAGAGGaGCCUCuUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 101284 | 0.7 | 0.914866 |
Target: 5'- gCCGCUGCCGacggCUgCCUCGGcGGccaGCCGc -3' miRNA: 3'- -GGCGAUGGUa---GA-GGAGCCuCU---UGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 211453 | 0.7 | 0.914866 |
Target: 5'- gCCcCU-CCG-CUCCUCGGAGGagucGCCGGa -3' miRNA: 3'- -GGcGAuGGUaGAGGAGCCUCU----UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 92051 | 0.7 | 0.914298 |
Target: 5'- gCGCUcgaGgCAUCUCacgcgcgCUCGGAGGGCCGc -3' miRNA: 3'- gGCGA---UgGUAGAG-------GAGCCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 120799 | 0.7 | 0.909089 |
Target: 5'- aCCGCcGCCGUCUCCcgUCGccGAGcaggaagaGGCCGAg -3' miRNA: 3'- -GGCGaUGGUAGAGG--AGC--CUC--------UUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 161495 | 0.7 | 0.896871 |
Target: 5'- uCCGCcGCCGcCUCCUCGGccu-CCGGg -3' miRNA: 3'- -GGCGaUGGUaGAGGAGCCucuuGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 7843 | 0.7 | 0.896871 |
Target: 5'- gCGCaACCAUCagCCaUGGAGGGCCGc -3' miRNA: 3'- gGCGaUGGUAGa-GGaGCCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 107374 | 0.7 | 0.890434 |
Target: 5'- gCCGC--CCGUCUUCUCGgGAGAGgUGAc -3' miRNA: 3'- -GGCGauGGUAGAGGAGC-CUCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 102554 | 0.7 | 0.890434 |
Target: 5'- gCCGCgcccgACCAcCUCCcCGGGGAgAUCGAc -3' miRNA: 3'- -GGCGa----UGGUaGAGGaGCCUCU-UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 28713 | 0.7 | 0.888462 |
Target: 5'- cCCGCcACCAucauccUCUCCUCcucccccggccgccGGAGGGCCa- -3' miRNA: 3'- -GGCGaUGGU------AGAGGAG--------------CCUCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 170469 | 0.71 | 0.876923 |
Target: 5'- cCCGUcGCCAUCggCUUCGGGGggUCu- -3' miRNA: 3'- -GGCGaUGGUAGa-GGAGCCUCuuGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 226428 | 0.71 | 0.876923 |
Target: 5'- -gGCgGCCGUCUCCa-GGAGAguccucGCCGAu -3' miRNA: 3'- ggCGaUGGUAGAGGagCCUCU------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 186190 | 0.71 | 0.872708 |
Target: 5'- uCCGCUcuguccggccagcugACCAagUUCUUGGAGGACCa- -3' miRNA: 3'- -GGCGA---------------UGGUagAGGAGCCUCUUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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