miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 43474 0.68 0.953007
Target:  5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3'
miRNA:   3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 45686 0.67 0.975132
Target:  5'- aCCGCgguaGCCAUCUUgUau-AGAACCGAa -3'
miRNA:   3'- -GGCGa---UGGUAGAGgAgccUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 52046 0.68 0.956781
Target:  5'- cUCGUUGgCAgUCUCCUCGGcGAAgCGGc -3'
miRNA:   3'- -GGCGAUgGU-AGAGGAGCCuCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 55665 0.68 0.956781
Target:  5'- aCCaCUACCAccaUCUCCUCcGGcGGACCu- -3'
miRNA:   3'- -GGcGAUGGU---AGAGGAG-CCuCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 57950 0.67 0.977524
Target:  5'- cCCGCUcgaACCGcggCggCCaCGGAGGACCGc -3'
miRNA:   3'- -GGCGA---UGGUa--Ga-GGaGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 68514 0.69 0.920419
Target:  5'- gCgGCggACgCAUCUCC-CGGAG-GCCGAg -3'
miRNA:   3'- -GgCGa-UG-GUAGAGGaGCCUCuUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 75697 0.67 0.966847
Target:  5'- gCCGCgcccCCAcCUCCUgcguaucuucgCGuGAGAACCGGg -3'
miRNA:   3'- -GGCGau--GGUaGAGGA-----------GC-CUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 76609 0.68 0.953007
Target:  5'- aCGCUcuuACCGUCUaucaCgUCGGAGAACUu- -3'
miRNA:   3'- gGCGA---UGGUAGA----GgAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 88036 0.68 0.953394
Target:  5'- gCCGCgguaucgucgucaucGCCGUCgCCUCcggagGGAGGACCGu -3'
miRNA:   3'- -GGCGa--------------UGGUAGaGGAG-----CCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 88206 0.72 0.831617
Target:  5'- aCCGUccuCCGUCUCCgacgCGGcuaacaGGAGCCGGa -3'
miRNA:   3'- -GGCGau-GGUAGAGGa---GCC------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 89464 0.67 0.966847
Target:  5'- aCGCUGCUcugCggcgUCUUGGAGAuggGCCGAu -3'
miRNA:   3'- gGCGAUGGua-Ga---GGAGCCUCU---UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 92051 0.7 0.914298
Target:  5'- gCGCUcgaGgCAUCUCacgcgcgCUCGGAGGGCCGc -3'
miRNA:   3'- gGCGA---UgGUAGAG-------GAGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 93697 0.68 0.956781
Target:  5'- cCCgGCUACC--CUCCUCGGcucACCGGa -3'
miRNA:   3'- -GG-CGAUGGuaGAGGAGCCucuUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 94774 0.68 0.953007
Target:  5'- gCCGgUccuCCAUCUCCUCGGAcaucuugcGAuuaucCCGAg -3'
miRNA:   3'- -GGCgAu--GGUAGAGGAGCCU--------CUu----GGCU- -5'
16223 3' -54.4 NC_004065.1 + 97146 0.66 0.979742
Target:  5'- aCUGCUGCugguCAUCcgaCUCGGAGGGgCGGg -3'
miRNA:   3'- -GGCGAUG----GUAGag-GAGCCUCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 101284 0.7 0.914866
Target:  5'- gCCGCUGCCGacggCUgCCUCGGcGGccaGCCGc -3'
miRNA:   3'- -GGCGAUGGUa---GA-GGAGCCuCU---UGGCu -5'
16223 3' -54.4 NC_004065.1 + 102554 0.7 0.890434
Target:  5'- gCCGCgcccgACCAcCUCCcCGGGGAgAUCGAc -3'
miRNA:   3'- -GGCGa----UGGUaGAGGaGCCUCU-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 106045 0.66 0.987017
Target:  5'- aCGCcgAUCGUgaCCaaGGAGGACCGGg -3'
miRNA:   3'- gGCGa-UGGUAgaGGagCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 107145 0.66 0.979742
Target:  5'- aCCGCcACCAUCUgCUgGGcagcucgcagguGGGGCUGGa -3'
miRNA:   3'- -GGCGaUGGUAGAgGAgCC------------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 107374 0.7 0.890434
Target:  5'- gCCGC--CCGUCUUCUCGgGAGAGgUGAc -3'
miRNA:   3'- -GGCGauGGUAGAGGAGC-CUCUUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.