miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 108396 0.68 0.960343
Target:  5'- gCGCUcaacGCCA--UCCUCGGGGGcauccugcccuACCGGg -3'
miRNA:   3'- gGCGA----UGGUagAGGAGCCUCU-----------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 113712 0.74 0.746118
Target:  5'- gCCGCUGCCGcCgccgacgccgacaCCUCGGAGAacuccggcgaggagGCCGAg -3'
miRNA:   3'- -GGCGAUGGUaGa------------GGAGCCUCU--------------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 115831 0.67 0.966847
Target:  5'- aCGaCUgaGCCAUCUCCUCGc--GGCCGGc -3'
miRNA:   3'- gGC-GA--UGGUAGAGGAGCcucUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 116409 0.67 0.977524
Target:  5'- uCCGCUuCCAgCcCCUUGGcGGGACCGc -3'
miRNA:   3'- -GGCGAuGGUaGaGGAGCC-UCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 117906 0.66 0.983685
Target:  5'- cCCGCUGCagaaagagggaUAUCgCCUCGG-GAuCCGGu -3'
miRNA:   3'- -GGCGAUG-----------GUAGaGGAGCCuCUuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 120206 0.69 0.935726
Target:  5'- gCC-CUGCCgAUCUUCUUGGGcGGACCGc -3'
miRNA:   3'- -GGcGAUGG-UAGAGGAGCCU-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 120799 0.7 0.909089
Target:  5'- aCCGCcGCCGUCUCCcgUCGccGAGcaggaagaGGCCGAg -3'
miRNA:   3'- -GGCGaUGGUAGAGG--AGC--CUC--------UUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 122054 0.66 0.987017
Target:  5'- uCCGCUGCCgGUCUcaacCCUUGuAGAugcacaggGCCGAu -3'
miRNA:   3'- -GGCGAUGG-UAGA----GGAGCcUCU--------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 122480 0.72 0.831617
Target:  5'- cCCGCgACCA-CaCCUCGGAGAACaCGu -3'
miRNA:   3'- -GGCGaUGGUaGaGGAGCCUCUUG-GCu -5'
16223 3' -54.4 NC_004065.1 + 124792 0.71 0.869857
Target:  5'- gCGCcACCAUCUCCUCGuccGAcguccGCCGGg -3'
miRNA:   3'- gGCGaUGGUAGAGGAGCcu-CU-----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 130671 0.68 0.949017
Target:  5'- gUCGCUGCCAacgCUCgUCGGgcgaGGAGgCGGa -3'
miRNA:   3'- -GGCGAUGGUa--GAGgAGCC----UCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 133766 0.66 0.981794
Target:  5'- cCCGCcguCCAUCcgcaUCCUCGaccacGAGCCGGg -3'
miRNA:   3'- -GGCGau-GGUAG----AGGAGCcu---CUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 140353 0.66 0.981794
Target:  5'- uCUGCUGCgagcuCGUCUCCaUUGGGGAuuCCGu -3'
miRNA:   3'- -GGCGAUG-----GUAGAGG-AGCCUCUu-GGCu -5'
16223 3' -54.4 NC_004065.1 + 146274 0.66 0.987017
Target:  5'- uCCGCgcgaguuccugGCCuucGUCUUCUCGGAcGACCa- -3'
miRNA:   3'- -GGCGa----------UGG---UAGAGGAGCCUcUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 149145 0.67 0.975132
Target:  5'- -aGUcGCCugAUCUUCgUCGGGGGGCCGGa -3'
miRNA:   3'- ggCGaUGG--UAGAGG-AGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 150504 0.68 0.960343
Target:  5'- cCCGCUcgGCCGUgCguaCCUCGGcgaugGGAACCa- -3'
miRNA:   3'- -GGCGA--UGGUA-Ga--GGAGCC-----UCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 159925 0.71 0.854368
Target:  5'- gCCGCUGCCGgugcugcUCgucgCCUCGGGGu-CCGc -3'
miRNA:   3'- -GGCGAUGGU-------AGa---GGAGCCUCuuGGCu -5'
16223 3' -54.4 NC_004065.1 + 161495 0.7 0.896871
Target:  5'- uCCGCcGCCGcCUCCUCGGccu-CCGGg -3'
miRNA:   3'- -GGCGaUGGUaGAGGAGCCucuuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 162159 0.66 0.985424
Target:  5'- -aGgU-CCGUCagcCCUCGGAGGAUCGGa -3'
miRNA:   3'- ggCgAuGGUAGa--GGAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 163624 0.71 0.862589
Target:  5'- aUGCUGCgCGUCUCCUCGGucagcGAGCg-- -3'
miRNA:   3'- gGCGAUG-GUAGAGGAGCCu----CUUGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.