miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 170469 0.71 0.876923
Target:  5'- cCCGUcGCCAUCggCUUCGGGGggUCu- -3'
miRNA:   3'- -GGCGaUGGUAGa-GGAGCCUCuuGGcu -5'
16223 3' -54.4 NC_004065.1 + 176541 0.69 0.935726
Target:  5'- -gGUcACCAUCUUCcCGGAGAGCuCGGc -3'
miRNA:   3'- ggCGaUGGUAGAGGaGCCUCUUG-GCU- -5'
16223 3' -54.4 NC_004065.1 + 178424 0.71 0.862589
Target:  5'- aCCGCUcAUgAUCaUCUUCGGGGucGCCGAa -3'
miRNA:   3'- -GGCGA-UGgUAG-AGGAGCCUCu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 179018 0.67 0.972559
Target:  5'- gCCGCgg-CGUCUCCucccaucgcUCGGAGGGCUa- -3'
miRNA:   3'- -GGCGaugGUAGAGG---------AGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 181464 0.73 0.761956
Target:  5'- cCCGCUuUCAUCUCCaucgucgCGGAGAAUCa- -3'
miRNA:   3'- -GGCGAuGGUAGAGGa------GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 185467 0.68 0.956781
Target:  5'- gCCGCUAgaGgacUUCCUCGGGGAgaugaggacACCGGg -3'
miRNA:   3'- -GGCGAUggUa--GAGGAGCCUCU---------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 186190 0.71 0.872708
Target:  5'- uCCGCUcuguccggccagcugACCAagUUCUUGGAGGACCa- -3'
miRNA:   3'- -GGCGA---------------UGGUagAGGAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 193851 0.68 0.960343
Target:  5'- cCUGCUGCCGUCgcuucgUCCgCGGcGAcucccGCCGAu -3'
miRNA:   3'- -GGCGAUGGUAG------AGGaGCCuCU-----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 194462 0.74 0.73382
Target:  5'- uCCGCcugugGCCGcCUUCUCGGAGAugguuauccaACCGAc -3'
miRNA:   3'- -GGCGa----UGGUaGAGGAGCCUCU----------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 205493 0.66 0.984746
Target:  5'- uCCGCUGCCGUCgucgcugccgccgCCaUCuuGGGGCCGGc -3'
miRNA:   3'- -GGCGAUGGUAGa------------GG-AGccUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 210122 0.73 0.751741
Target:  5'- aCCGCUACCGUCuucgauUCCUCGGcggcgacGGggUgGAu -3'
miRNA:   3'- -GGCGAUGGUAG------AGGAGCC-------UCuuGgCU- -5'
16223 3' -54.4 NC_004065.1 + 210994 0.67 0.977524
Target:  5'- aCCGCcGCCGUCgUCCaacccuUCGGAGucgUCGAu -3'
miRNA:   3'- -GGCGaUGGUAG-AGG------AGCCUCuu-GGCU- -5'
16223 3' -54.4 NC_004065.1 + 211098 0.76 0.625949
Target:  5'- gCUGCUgcccGCCGUCUcgCCUCGGuuuaugAGAACCGAg -3'
miRNA:   3'- -GGCGA----UGGUAGA--GGAGCC------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 211453 0.7 0.914866
Target:  5'- gCCcCU-CCG-CUCCUCGGAGGagucGCCGGa -3'
miRNA:   3'- -GGcGAuGGUaGAGGAGCCUCU----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 211700 1.11 0.005486
Target:  5'- gCCGCUACCAUCUCCUCGGAGAACCGAa -3'
miRNA:   3'- -GGCGAUGGUAGAGGAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 212270 0.66 0.987017
Target:  5'- gCCGCUGCaCA-CUCCUCcGAGGAa-GAa -3'
miRNA:   3'- -GGCGAUG-GUaGAGGAGcCUCUUggCU- -5'
16223 3' -54.4 NC_004065.1 + 226428 0.71 0.876923
Target:  5'- -gGCgGCCGUCUCCa-GGAGAguccucGCCGAu -3'
miRNA:   3'- ggCGaUGGUAGAGGagCCUCU------UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.