Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 102554 | 0.7 | 0.890434 |
Target: 5'- gCCGCgcccgACCAcCUCCcCGGGGAgAUCGAc -3' miRNA: 3'- -GGCGa----UGGUaGAGGaGCCUCU-UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 101284 | 0.7 | 0.914866 |
Target: 5'- gCCGCUGCCGacggCUgCCUCGGcGGccaGCCGc -3' miRNA: 3'- -GGCGAUGGUa---GA-GGAGCCuCU---UGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 97146 | 0.66 | 0.979742 |
Target: 5'- aCUGCUGCugguCAUCcgaCUCGGAGGGgCGGg -3' miRNA: 3'- -GGCGAUG----GUAGag-GAGCCUCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 94774 | 0.68 | 0.953007 |
Target: 5'- gCCGgUccuCCAUCUCCUCGGAcaucuugcGAuuaucCCGAg -3' miRNA: 3'- -GGCgAu--GGUAGAGGAGCCU--------CUu----GGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 93697 | 0.68 | 0.956781 |
Target: 5'- cCCgGCUACC--CUCCUCGGcucACCGGa -3' miRNA: 3'- -GG-CGAUGGuaGAGGAGCCucuUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 92051 | 0.7 | 0.914298 |
Target: 5'- gCGCUcgaGgCAUCUCacgcgcgCUCGGAGGGCCGc -3' miRNA: 3'- gGCGA---UgGUAGAG-------GAGCCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 89464 | 0.67 | 0.966847 |
Target: 5'- aCGCUGCUcugCggcgUCUUGGAGAuggGCCGAu -3' miRNA: 3'- gGCGAUGGua-Ga---GGAGCCUCU---UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 88206 | 0.72 | 0.831617 |
Target: 5'- aCCGUccuCCGUCUCCgacgCGGcuaacaGGAGCCGGa -3' miRNA: 3'- -GGCGau-GGUAGAGGa---GCC------UCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 88036 | 0.68 | 0.953394 |
Target: 5'- gCCGCgguaucgucgucaucGCCGUCgCCUCcggagGGAGGACCGu -3' miRNA: 3'- -GGCGa--------------UGGUAGaGGAG-----CCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 76609 | 0.68 | 0.953007 |
Target: 5'- aCGCUcuuACCGUCUaucaCgUCGGAGAACUu- -3' miRNA: 3'- gGCGA---UGGUAGA----GgAGCCUCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 75697 | 0.67 | 0.966847 |
Target: 5'- gCCGCgcccCCAcCUCCUgcguaucuucgCGuGAGAACCGGg -3' miRNA: 3'- -GGCGau--GGUaGAGGA-----------GC-CUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 68514 | 0.69 | 0.920419 |
Target: 5'- gCgGCggACgCAUCUCC-CGGAG-GCCGAg -3' miRNA: 3'- -GgCGa-UG-GUAGAGGaGCCUCuUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 57950 | 0.67 | 0.977524 |
Target: 5'- cCCGCUcgaACCGcggCggCCaCGGAGGACCGc -3' miRNA: 3'- -GGCGA---UGGUa--Ga-GGaGCCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 55665 | 0.68 | 0.956781 |
Target: 5'- aCCaCUACCAccaUCUCCUCcGGcGGACCu- -3' miRNA: 3'- -GGcGAUGGU---AGAGGAG-CCuCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 52046 | 0.68 | 0.956781 |
Target: 5'- cUCGUUGgCAgUCUCCUCGGcGAAgCGGc -3' miRNA: 3'- -GGCGAUgGU-AGAGGAGCCuCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 45686 | 0.67 | 0.975132 |
Target: 5'- aCCGCgguaGCCAUCUUgUau-AGAACCGAa -3' miRNA: 3'- -GGCGa---UGGUAGAGgAgccUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 43474 | 0.68 | 0.953007 |
Target: 5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3' miRNA: 3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 40610 | 0.68 | 0.96238 |
Target: 5'- aCUGCUACCuUCccgagaaaaucaaaUCCUCGGcGAcggugacGCCGAa -3' miRNA: 3'- -GGCGAUGGuAG--------------AGGAGCCuCU-------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 40117 | 0.66 | 0.983685 |
Target: 5'- gCCGCUauauugguggugGCgAUCUCCgcgcUCGuGAGAcgcuGCCGAc -3' miRNA: 3'- -GGCGA------------UGgUAGAGG----AGC-CUCU----UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 39271 | 0.68 | 0.948606 |
Target: 5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3' miRNA: 3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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